Fructilactobacillus vespulae: R4B61_04500
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Entry
R4B61_04500 CDS
T11124
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
fvs Fructilactobacillus vespulae
Pathway
fvs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fvs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R4B61_04500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fvs03019
]
R4B61_04500
Messenger RNA biogenesis [BR:
fvs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
R4B61_04500
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF7659
Motif
Other DBs
NCBI-ProteinID:
XNW44184
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Position
complement(925684..927372)
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AA seq
562 aa
AA seq
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MNKLNVKNNETAIYGVGGLGEIGKNTYGVQFQDEIVLIDAGIKFPEDSQLGIDYVIPDYQ
YLVENQNKIKALVITHGHEDHIGGIPFILKAINVPVYAGPLALAMIKGKLEEHGMLKQTE
LHEISDKSVLKFKKTSVSFFRTTHSIPDALGVAVHTPDGVIVETGDYKFDLTPVTNTPPD
LQAMAKLGEEGVLCLMADSTNAEKPVWTKSESYVSNSVRKIFDRVDGRIIFATFASNLSR
VMTAIDSAYKHGRKVAVFGRSMEAAVVNGRALGYIKVPDSAFVDASQLKSLPSNKVMILC
TGSQGEQMAALSRIANGTHRQITMEPGDTVVLSSNPIPGNVLSVNRVVNELEEAGTHVIR
GYENKIHTSGHGGQEEEKLMIRLMKPKFFVPIHGEYRMQKIHIGLAEQCGVPKDHSFILK
NGDVLALTKDTARFAGSFAAGDVFIDGNGTDSVNKNVIRDRQLLSEEGLVVVVATINLKD
KEIQSGPDLLSRGFVYMRESGELLDQGRNLVFKTIRRAMNNKNADERIIKRAIVNELSNF
LYEKTERKPLILPMLIMNNTKK
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgaataagctaaacgtcaaaaataatgaaacagctatctatggcgttggtggtttggga
gaaattggtaagaatacctatggagttcaattccaagatgaaattgtcttaattgatgcc
ggaattaaattcccagaagatagtcaattaggtattgattacgtaattccagattaccaa
tacctggtagaaaatcaaaataagattaaagcattagtaatcacccatggtcacgaagat
catatcggtggaatcccttttatcttaaaagcaattaacgtgcccgtatatgcaggtccc
cttgctttagcaatgattaaaggaaaacttgaagaacacggaatgctcaagcaaaccgaa
ttacacgagatttctgataaatcagttttaaaatttaaaaaaaccagtgtttcttttttc
agaacaacccattctatcccagatgctttgggtgttgctgtacatactcctgatggtgta
attgttgaaactggagattacaaatttgacttgactcctgttactaacactccaccagat
ttacaagcaatggctaagttgggtgaagaaggcgtcctctgtttaatggcagatagtacg
aatgcagaaaaaccggtttggaccaagtctgaaagttacgtaagtaattcagtaagaaaa
atctttgatcgagtagatggaagaattatctttgccacctttgcttctaacctatcccga
gtaatgacagccattgactcggcatacaaacatggtcgtaaagtcgctgtctttggtcgt
agtatggaagctgccgtagttaacggtagagctctcggatacattaaagttcctgatagc
gcctttgtcgatgcttcccaattaaagtcattaccatcaaacaaggttatgattctatgt
accggatctcaaggtgaacaaatggctgccctttccagaatcgctaacggtacccaccgc
caaatcacaatggaacccggggatacagttgttttatcaagtaaccccatccctggtaac
gttttaagtgttaaccgagtggtaaatgaactagaagaagctggaacccatgtaattcgt
ggttatgaaaataaaattcatacttctggtcacggtggtcaagaagaagaaaaattaatg
attcgcttaatgaaaccaaaatttttcgttcctattcacggtgaatacagaatgcaaaaa
attcacattggcttagctgaacaatgtggcgttccaaaggatcattcatttatccttaaa
aatggtgatgtgcttgcactaactaaagatactgcccgctttgccggtagttttgcggct
ggtgatgtctttattgatggaaatggtactgatagcgttaataaaaacgttattagagat
cgtcaacttctttctgaagaaggtctagtggtggtagttgcaaccattaatcttaaggac
aaagagattcaatcaggaccagatttattatcacgtggatttgtttatatgcgtgaatct
ggtgaattgttggatcaaggtcgaaatcttgtatttaaaaccattcgtcgtgccatgaac
aataaaaatgccgatgaaagaatcataaaacgtgcgattgttaatgaactttctaatttc
ttatatgaaaaaacagaacggaaaccattaattttaccaatgttaattatgaataatact
aaaaaataa
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