Candidatus Formimonas warabiya: DCMF_00605
Help
Entry
DCMF_00605 CDS
T07208
Name
(GenBank) 23S rRNA (uracil-5-)-methyltransferase RumA
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
fwa
Candidatus Formimonas warabiya
Brite
KEGG Orthology (KO) [BR:
fwa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fwa03009
]
DCMF_00605
Enzymes [BR:
fwa01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
DCMF_00605
Ribosome biogenesis [BR:
fwa03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
DCMF_00605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_15
Cons_hypoth95
MTS
Methyltransf_25
PrmA
TRM5-TYW2_MTfase
N6_N4_Mtase
PCMT
UPF0020
Methyltransf_11
Motif
Other DBs
NCBI-ProteinID:
ATW23494
UniProt:
A0A3G1KM54
LinkDB
All DBs
Position
141988..143337
Genome browser
AA seq
449 aa
AA seq
DB search
MGLSVALGDMIEIRIEGVTHQGWGIGRLQGFTVFVPGTLPAETVQAQIDQVKKSFAVARL
IRITESSPYRIDSVCSIYHSCGGCHLQHAAYQHQLELKRRMVRDVLARVGHISEIKVHPV
LGMNYPWQYRNRVQFHVQVTNGKVEIGFYRPGTRELVPVEKCSLLPGIFNDIRLFLEKKL
QSYFPADDLSGWRHFVLKISRANQEIAAAFVTYRREMAILDDLAKALMGRFPQVVSVLQN
MNPQNSGAVFGPEWRLIVGKERIEDKIGKVCFSISPGSFVQVNPEQTEVLYGKVLDYAAL
KGVETVVDVYCGIGTISLLLALQAGKVYGIEEFKEAVKDAELNARLNGITNTEFFAGKAE
VLLPKMSAAGTKPDLIVVDPPRKGCDPAVLDAIAGMKPAKVIYVSCDPATLARDLKILEE
KGYRTEEVQPVDMFPQTSHTEVCCLIEKA
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggggctatctgttgctttgggggatatgatcgagattcggattgaaggagtgacgcat
caaggatgggggattggcaggctccaagggtttaccgtttttgttccaggcactctccct
gcggagacagtgcaggcccaaattgaccaggtgaaaaagtcttttgccgtggccagattg
attcgcattacggaaagttctccttaccggatcgactcagtgtgttctatctatcactcc
tgcggaggttgtcatctccagcatgccgcttatcagcatcaactggaattaaagcgccgg
atggtgcgagacgttctggccagagtcggccatatttcagaaataaaagtccatcctgtg
ttaggaatgaactacccctggcaatatcgcaaccgggtccagtttcatgtgcaggttacc
aatggcaaagttgagatcggtttttaccggccggggacccgggaattggttcccgtagaa
aaatgctctcttttacctggcatattcaacgatatccgtttgtttttggaaaagaagctg
caatcctatttccctgccgacgacctttccggatggagacactttgttttgaaaataagc
cgggccaatcaggaaattgccgccgcttttgtgacctatcgccgggaaatggcaatcttg
gatgatctggcaaaagctttaatgggccgtttccctcaagtcgtatccgtcctacagaat
atgaacccgcaaaattctggtgccgtctttggaccggaatggcgattgatcgtgggtaag
gaaagaatagaagataaaattggaaaagtatgtttttctatcagccccgggtcatttgtc
caggtcaacccggaacagacagaagttctttatggaaaagtcctggattatgcagcttta
aagggagttgagacagtggttgatgtatactgcggaattgggaccatctctcttctcctg
gccctacaggcggggaaagtgtatggcatagaggagttcaaagaggcggtaaaagatgcg
gaactcaacgccaggttgaatggaataaccaatacggagtttttcgcgggcaaggcggaa
gtcttgttgcccaaaatgtctgcggccgggaccaaaccggacctaattgtagtggatccc
ccacgcaaagggtgtgatccggccgttttggatgccattgccgggatgaagccagctaaa
gtgatttatgtatcctgcgatccggccaccttggcccgggatttaaaaatacttgaggaa
aaagggtatagaacggaagaggtccagccggtggatatgtttccgcagacgagtcatacg
gaagtatgctgtttgatcgagaaggcataa
DBGET
integrated database retrieval system
