Candidatus Formimonas warabiya: DCMF_01550
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Entry
DCMF_01550 CDS
T07208
Name
(GenBank) recombinase RecD
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
fwa
Candidatus Formimonas warabiya
Pathway
fwa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fwa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DCMF_01550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fwa03400
]
DCMF_01550
Enzymes [BR:
fwa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
DCMF_01550
DNA repair and recombination proteins [BR:
fwa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DCMF_01550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
HHH_RecD2
AAA_30
OB_YrrC
SH3_13
UvrD_C_2
AAA_11
HHH_5
Viral_helicase1
Helicase_RecD
DEAD
PIF1
FTHFS
CbiA
SLFN-g3_helicase
AAA_22
AAA
HHH_2
SRP54
AAA_28
nSTAND3
TraI_hel_assoc_N
UvrD-helicase
AAA_31
AAA_24
NPHP3_N
ResIII
Motif
Other DBs
NCBI-ProteinID:
ATW23657
UniProt:
A0A3G1KMJ2
LinkDB
All DBs
Position
352186..354330
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AA seq
714 aa
AA seq
DB search
METLAGMVERITFANEENGFCVIKIKSRGFHDLVTVVGNLAAVNVGAVVYLKGEWRIDGK
YGKQFVVQDYRETVPATVAGIEKYLGSGLIKGIGPVNAKRIVCQFRELTIQVIEEEPDRL
IEVEGIGPKRVGMIKRAWEEQKEIKNVMLFLQSHGVSTSFAVKIYKAYGNKSIEVVKQNP
YRLADEIWGIGFRTADKIAQKMGFDKDSYERCRAGIIYVLNELSNEGHCYATREQLVEES
VKILEQSEENIQEAVEQMLAAKALILDFEDAIYLPPFYFSEVGVAKLVSRLNTVQEQKDY
GKIMAKVQKDCGIVYDEIQEAAIKTALMAPFMVLTGGPGTGKTTTTLGIIQAFLSMGKKV
LLAAPTGRAAKRMTEVTGLEAKTIHRLLEYSPAEGYKRNEQQPLVCDVLIIDEASMIDLI
LMYNLMKAVPAGASVILVGDADQLPSVGAGNVLRDIIESACVHVVSLTRIFRQAQDSMIV
LNAHRINRGEFPQLRGGKNKDFFFVEEEVPEQIPEQIRKLCATRLPGYFGVSPVHDIQVL
CPMQRGEAGTGYLNALLQETLNPSQVVAKYGPTTFKTNDKVMQIKNNYDKGVFNGDIGVI
KQIDLEDKKIVISFDENEIEYDLSEMDEVVLAYAITVHKSQGSEYKIVVAPFTTQHFMML
QRNLLYTCVTRAKQAFVAVGSQKALAMAVKNNKTTKRNTMLARRIGEQKSPAWD
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atggagactctggcaggaatggtagagagaattacctttgccaatgaggaaaacggcttt
tgcgtgatcaaaatcaagtctaggggatttcatgacttggtgacggtagtgggaaacttg
gccgccgtgaatgtgggggcagtcgtatacctgaaaggcgaatggagaatagacggtaag
tacggcaaacagtttgtggtgcaagattaccgggagacggtgccggccacagtggcgggg
atagaaaagtacctgggcagcgggctgatcaaaggaatcgggcctgtcaatgccaaaagg
attgtgtgtcagtttagagaattaacgattcaagtgatcgaagaagagccggaccggtta
atcgaagtggagggcatcggcccgaaaagagtgggtatgattaaacgggcctgggaggaa
caaaaggaaatcaagaatgtgatgctgttcctccaaagccacggcgtgtccacttctttt
gccgtcaaaatctataaagcatatggcaataaaagcattgaagtcgtgaagcagaatccc
taccggctggcagatgagatttggggcattggttttcgaacggcagataaaattgcccaa
aaaatgggctttgataaagattcttatgagagatgccgggcggggatcatctatgtttta
aatgaactctccaatgaggggcactgctatgcgacgcgagagcaactggtggaagagtcg
gtcaagatattggaacagtctgaagaaaatattcaagaggccgtggaacaaatgctggcc
gcgaaggcgttaatccttgactttgaggatgccatctacctgcctcccttttattttagc
gaagtgggggtggcaaaattggtcagccggttgaatactgtccaggaacaaaaggactat
gggaaaattatggccaaagtgcaaaaggattgcggcatcgtctatgacgaaatccaggaa
gccgccattaagaccgctttaatggccccattcatggttctcaccgggggacccggaacg
ggaaaaacaaccactaccttgggcatcattcaagcctttctctccatgggaaaaaaggta
ttgctggctgcccccacgggcagagcggccaaacggatgacggaggttaccggtttggag
gccaaaactattcaccggctgctggaatactcaccggcggaagggtataaaagaaatgaa
cagcagcctttggtctgtgacgtcctgattattgatgaggcctccatgattgatctcatc
ctcatgtataatttgatgaaggctgtgcctgccggggcttcggtgattctggtcggtgat
gcggaccagctaccctcggtgggtgcgggaaatgtcttacgcgacatcattgaatcggca
tgtgtacatgtggtatccttgacaagaatattccggcaggctcaggacagcatgatcgtt
ttgaatgcccaccgcatcaaccggggcgagtttccccagctgagagggggaaaaaacaaa
gattttttctttgtcgaggaggaagtcccggaacagatcccggagcagattagaaagctg
tgcgccacaagattgcccgggtatttcggcgtcagtcccgttcatgatatccaggtgctc
tgccctatgcagagaggggaagccggaaccgggtatctcaatgctctgttgcaggaaact
ttgaacccctcccaggtcgtggccaaatacgggcccaccacctttaaaacaaatgataag
gtgatgcagatcaaaaacaattatgataaaggggtcttcaacggggatatcggcgtgatc
aaacagattgatcttgaggataagaagatagtgatttcctttgatgaaaacgagatcgaa
tacgatctctccgaaatggacgaagtggtattggcctatgccattaccgtacataaaagc
cagggaagcgaatacaaaattgtggtggctccttttaccacgcagcattttatgatgctg
caaaggaatctcttgtatacctgcgtgacccgggcaaagcaggcttttgttgctgtgggc
tcccaaaaagccctggccatggcggttaaaaataataaaaccaccaaaaggaacaccatg
ctggcccgcaggattggggaacaaaaatctccggcatgggattag
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