Candidatus Formimonas warabiya: DCMF_02975
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Entry
DCMF_02975 CDS
T07208
Name
(GenBank) helicase-exonuclease AddAB subunit AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
fwa
Candidatus Formimonas warabiya
Brite
KEGG Orthology (KO) [BR:
fwa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fwa03400
]
DCMF_02975
Enzymes [BR:
fwa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DCMF_02975
DNA repair and recombination proteins [BR:
fwa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
DCMF_02975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
ATW23894
UniProt:
A0A3G1KN50
LinkDB
All DBs
Position
659085..662615
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AA seq
1176 aa
AA seq
DB search
MSLRFICGRAGSGKTRFCLNEIKARICSGTTKPVVLLVPEQFSFQAERDLITVLETGGIL
KTEVLSFRRLAFRIFHEVGGITYPHIHPAGKCMILYRILDKMRDSFHVFAKSVDRQGFIN
TLATLITELKRYNITPEILETAGKRLDDEDPLKDKLMELHAIYAIFEQTLRERYRDADDD
LSQAAEKLGAASLYEGAEIWIDGFSGFTPQEFQVIGRLLRKAERVNISFCTDGLDGDNAS
GDTDVFSAVKTAYRKLVKIAQENGIEIEPFVHLNHHPLFRFRASPELSHLEAYLNAYPYK
IYREKTRDVLLFSALNIFSEIEAAARDIIHLCRDRGLRYREIAVVTRNLAGYENLIEVIF
TEYGIPCFIDRKRDIANHPLIRLILSMLDIFNENWSYEAVFRYLKTGMTEIDQESIDRLE
NYVLACGIRGSRWTEEKDWNMSPDLIPDQKSLDAQSKMLEDVNSIRALVSAPLLEFRKKN
KGRKKAAELCGSLYDFLCTLGVPERIEDSIERFRKSGDLNLANEYSQVWNIVMEVFDQTV
EVMGEETFGIERFSDILKIGFGEYQIGLIPASLDQVLVGSAERSKSHEIKAMYILGVNDG
VFPSAVLEEGILSDQDRAVLNKAGIELASDTRTQAFDEQYLVYRALTTAGNYLRISWPIA
DQEGRTMRPSMVIFRLRKLFPALSETSNILSDLSPEEEIGLVSSRDPSFKQMVTALRQRA
DGKEIPPIWPEVYRWFAAQEEWKEKCRTVRSAFQYKNLARPVGQDKILALYGDPALSSVS
RLEKFTACPFAFYVQYGLGARERKVYRLSPPDVGTFMHAVIERFSRLVSEGDLSWRNFDR
DWCQAKVGEIVDEMLQKMQGAGIAGSKRYTAMIVRLKRVVSRAVWLIAEHIRRSSFNPVA
YEVGFGAQEKYPPITIELDSGEKIFLTGRIDRVDALKTEEGTYLRVVDYKSGSKDFRLSD
LYYGLQIQLITYLDAIQQGQQGDDSLALKVRQTKEPSPCPDKVAEGQTEEPSPCLPGGML
YFKIDDPMIKGNGKLTEEEIELAIMKQLRMRGLLLADVKLIKEMDHTMEGSSLIIPATIN
KGDVLGKNTSAATMAQFKLLRKYVRKLLKDLCREMMKGNVSIQPYKKKGTTSCTYCSFLP
VCQFDTSRKENAFRLLYDKENDEVWSLMGEEGKTNG
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagtttaagatttatctgtggcagagcaggaagtggaaaaacacgcttttgccttaat
gaaattaaagcaagaatatgttccggcaccaccaaaccagtggtcttgcttgtgccggaa
cagtttagttttcaggccgaaagggacctgatcacagtgctggagacgggcggtatcttg
aaaaccgaggtcttaagcttccggcgcttagccttccggattttccacgaggtgggcggt
attacgtacccccacattcatcctgccggtaaatgcatgattctctaccggatcctggac
aaaatgcgggatagcttccatgtttttgccaagtccgtggaccggcaaggctttatcaat
acgctggccaccttgattacggagttgaaacggtacaatattacccccgaaatcctggaa
actgccgggaagaggcttgatgatgaggacccgttaaaggacaagctgatggaattgcat
gccatttacgccatatttgaacagactttgagagagagataccgggatgcagacgatgac
ctgtcccaggctgcagaaaaacttggcgctgcttctctttatgagggtgccgaaatctgg
attgacggtttttccggctttacgccccaggaattccaggtgatcgggcgtctgctccgc
aaggcggaacgggtgaatatcagcttctgtaccgatgggttggatggggataatgcttct
ggtgatacggatgtcttttctgcggtaaaaaccgcttacagaaagctggtcaagatcgcc
caggagaatggcattgaaatagaaccttttgtccatttgaaccatcatcccttgttccgt
ttccgtgcgagtcccgagctttcccacctggaagcttatctgaatgcctatccgtacaaa
atctaccgggaaaaaaccagggatgtattgcttttttctgcgctcaatattttttccgaa
attgaggctgccgccagggatattattcatttgtgccgggaccggggtctcaggtacagg
gaaattgccgtggtaacaagaaacctggccggttacgaaaatttaattgaggttatcttt
acggaatatggcattccctgtttcatagacaggaagagggacattgccaatcatcctttg
atccgattgattctatctatgctggacattttcaacgaaaactggtcttatgaggcggta
ttccggtatctgaaaaccggcatgactgagatcgaccaggaaagcatcgaccggctggaa
aactatgttttagcctgtggcatccggggcagccgctggaccgaggaaaaagactggaat
atgagccctgacctgattccggatcaaaaaagcctggacgcccagagcaagatgctggaa
gacgtcaacagcatccgggcgctggtttcggcaccactgctggaattcaggaagaaaaac
aaagggagaaagaaagcggccgagctctgcggtagcctctatgacttcctatgtaccctg
ggcgtgccggagcggatagaagacagcatagaaaggtttcgaaagagcggggatctgaat
ctggccaatgaatattcccaggtctggaatattgtgatggaggtttttgaccagacagta
gaggtgatgggggaggaaacctttggtattgagcggtttagcgatattttaaaaattgga
tttggtgaatatcaaatcggcctgatccccgcctccctggaccaggtgctggtcgggagt
gcagaacgctccaaaagccatgagatcaaagcaatgtatatcttaggtgtcaacgatgga
gtattcccttctgcggtccttgaggagggcatcctttcggaccaggacagggcagtatta
aataaggctggtattgagctggccagcgacaccaggacccaggcctttgacgagcaatat
ttggtatacagggcactgactacggcgggaaattatttgagaatcagctggcccatagca
gaccaggaaggcaggaccatgcgcccttcgatggtgatattccggttacgcaagctattt
ccggcccttagcgaaaccagtaacattctttccgacctttcccctgaagaggagattggc
cttgtatcatccagggatccttccttcaagcagatggtgacggctttgcgccaaagagcc
gacggaaaggaaattccccccatttggccggaggtgtaccgctggtttgccgcccaggag
gaatggaaggaaaaatgccggaccgtccggagtgcatttcaatataaaaatcttgcccgt
ccggtgggtcaggataaaatcctcgccctttacggagaccctgccctgtccagtgtatcc
agactggaaaaattcacggcctgtccttttgctttttatgtgcaatacgggctgggagcc
agagaacggaaggtgtaccgtctcagtccgccggacgtgggaacctttatgcatgctgtg
attgagcggttttccagacttgtttcggaaggagatctttcttggcggaactttgaccgg
gactggtgccaggccaaggtaggggaaattgtggatgaaatgctgcagaagatgcagggg
gcaggaattgcaggctccaaacgatacacagccatgatcgtcaggctgaagcgtgtggta
tcccgggcagtctggctgattgcggagcatatccgcaggagcagttttaatcctgttgca
tatgaagtaggcttcggagcacaagagaagtatccccccatcaccattgagcttgattcg
ggtgaaaagattttcctcacaggaagaattgacagggtggacgcgctgaaaacggaagaa
ggtacctatttgcgggttgttgattataaatcgggcagcaaagatttcaggctctcggat
ctctactatggcctccagattcagttaatcacctatctggatgccattcagcaagggcag
caaggggacgactctctcgctctcaaagtgcgacagacaaaagaaccgtccccttgtcca
gacaaagtggcagaagggcagacagaagaaccgtccccttgtctcccgggggggatgctg
tattttaaaatagacgatccgatgattaaaggaaacggcaagctgactgaggaagagatt
gagctggcgatcatgaagcagctcaggatgagagggctcctcctcgccgatgtaaagctg
attaaggaaatggaccacaccatggaagggtcttctctgatcatccctgccaccatcaat
aaaggagatgtgctgggcaagaatacttccgctgctacgatggcacagttcaagctgctg
cgtaaatacgtgagaaagcttttgaaggatttatgccgagagatgatgaagggaaatgtt
tccattcagccatacaagaagaagggaaccacctcctgcacatactgcagctttttgccc
gtgtgccagtttgacacgagcaggaaagaaaacgcatttcggctgctttatgacaaggaa
aatgatgaagtatggagcctgatgggggaggagggtaaaacaaatggctga
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