Candidatus Formimonas warabiya: DCMF_02980
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Entry
DCMF_02980 CDS
T07208
Name
(GenBank) helicase-exonuclease AddAB subunit AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
fwa
Candidatus Formimonas warabiya
Brite
KEGG Orthology (KO) [BR:
fwa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fwa03400
]
DCMF_02980
Enzymes [BR:
fwa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DCMF_02980
DNA repair and recombination proteins [BR:
fwa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
DCMF_02980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
DEAD
AAA_30
AAA_11
ResIII
AAA_12
DUF2059
DTW
Motif
Other DBs
NCBI-ProteinID:
ATW23895
UniProt:
A0A3G1KP49
LinkDB
All DBs
Position
662608..666369
Genome browser
AA seq
1253 aa
AA seq
DB search
MADQKWTKEQWEAISEKDCNLLVAAAAGAGKTAVLVERVIQKITDEENPVDIDRLLIVTF
TNAAATEMRERIAEAISLRLEKKPGSVNIRKQLTLLGKTSITTIHSFCLEVIRSNFQNIN
IDPGFRIADETESTLMRLEALSELFEEQYEQENAHFLDLLERYGGNKDDQALQDLVLNLY
SFIQSSPWPQKWLDEKTESLNVPAGIDFGETSWGSVLLASVKLELKGLSAMLSRAVEVLK
SAQGLEKYQAVYEEDLTNMDRLLMILDQRGQAFWDSLFEELHGLEFATLPRSGKEVDREK
QEYVKKIRDDVKTGVKKLREKMVTADSCEIITDLNTLYPIMKVLSGLVTGLTEKYGEKKN
RKSVVDFNDLEHFCLEILSERGEGGQLKPSPVARRYRERFAEILVDEYQDSNLVQEIIIS
LISRADTAQPNVFMVGDVKQSIYRFRQSRPELFLEKYHTYTPDRGNPFRKILLFKNFRSR
KEVVDGVNFIFKQIMSARVGELDYTDHEALNPGAIFEENDRDDFMVGGEVDLDLIQTGGR
EGRASLETEEEEAREDAAGEWSDEEMLDHVQCEARLVARKILALMVPDENGKRFSVFDKD
RKGYRQVEFRDIVILLRTTRNWSDIFLDELFMLGIPAFADMGTGFFKTIEVQVILSLLQI
IDNPLQDIPLLAVLRSPMVAFSTDQLAELRLADRKASLYEALKKLAEEGQESTKEKAAAF
LEHLQRWREMSLYLSTDQLLWQLYRDTGYYGMVGAMPAGEQRQANLRILFERARQFEETS
YKGLFNFIRFIDKLKASRGDMGSAKILGEHDNVVRIMSIHKSKGLEFPVVILAGCGKKFN
LQDMNKSILVHQDLGLGADVVDHKRRLSWPSAAKEAIRAKIKAESLSEEMRILYVAMTRA
REKLIITGAVNDAAKAVGRWSVSAGIQGSKLPDYEMLKGANYLDWIGPALLRHKNCTVLL
DYLNTGTQFCGLPMEDGSRWRIQVWTKSDVLSSRISDVHEENEFMRWLDSLESTEEPTDY
QEEISGRLSWDYPYLKASRVPAKVSVTELKRRFHAELAEQTVPFPDDLPLLVKKPLFLEE
RKGLSAAETGTVLHFVMQHLDYGREDLAAQMEKMVAKDLLTAQQARSVDLDKIRRFLESP
LGKRILASGNIYREVPFNIEIPCQELYAGLVDEACQGETLLLQGVIDCFFVERDGIVLLD
YKTDYVPAGGIDRIRERYRLQIDYYARALEMLTGKKVKERYIYLFWNGEVLEY
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
atggctgatcaaaaatggacaaaggaacagtgggaggccattagcgagaaagactgcaac
ctcctggtggctgccgccgcaggtgccggaaaaacggcggtgctggtggagcgggtaatc
cagaaaatcaccgatgaggagaatccggtagacattgacaggcttctcattgtcaccttt
accaatgccgccgccacagaaatgcgggaaagaattgccgaagctatctctttgcgcttg
gagaagaaaccgggttcggtgaatatccggaagcagctgactttgctgggtaaaaccagc
attaccaccatccattctttttgtctggaggtgatccgcagcaattttcaaaatatcaat
attgatccgggttttcgtattgccgatgaaactgaaagcacattaatgaggctggaagct
ttgagtgagctgtttgaggaacagtatgagcaggaaaacgcccatttcctcgatcttctg
gaacgttatggcggtaataaagatgaccaggccctgcaggatctggtgctgaacctgtat
agttttatccagagcagtccctggccccaaaaatggttggatgaaaagacggagagccta
aatgtcccggccgggatagatttcggagaaacatcctggggaagcgtgcttttggcttcg
gtaaagcttgagctgaaaggtctgagcgcgatgctgtcccgggccgttgaagtgttgaaa
tctgcccaagggctggagaaataccaagcggtatacgaggaagacctgaccaatatggat
agactcctaatgattttggatcaaaggggtcaggcattctgggacagcctttttgaagaa
ctgcatgggttggagtttgccacccttccccgcagcggcaaggaggttgaccgggagaag
caggagtatgtaaagaagatccgggatgatgtgaaaacaggggtcaaaaagctccgggaa
aagatggtcacagccgattcctgtgaaattattactgatttgaataccttatacccgatc
atgaaggtcctttccggtctggtcaccgggttgacggaaaagtacggggaaaagaaaaac
cgtaaatcagtcgtggattttaacgatctggagcatttctgcctggaaatcttgtctgag
agaggggaagggggccagttgaaaccgtctccggtagcacgccgctaccgggaacggttt
gcggagattctggtggatgaatatcaggacagtaatctggtgcaagaaatcatcattagc
ctgatttcccgggcggataccgcccagcccaatgtgttcatggtaggggatgtcaagcaa
agcatctatcggttccggcagtccaggccggagttgttcctggaaaaataccatacctat
acaccagatcggggaaacccctttcgcaaaatactgctcttcaagaattttcggagccgc
aaggaagtagtggatggcgtcaattttatctttaagcagatcatgtcggcacgcgtcggt
gaattggactataccgatcacgaagctttgaacccgggagcgatttttgaggaaaacgac
cgggacgattttatggtgggaggtgaagtggacctggatctgatccaaaccggaggcagg
gagggtcgggcctcactggaaacggaagaggaagaagcccgggaagatgccgccggggaa
tggtcggatgaggaaatgctggatcatgtccagtgtgaggcccggctggtggcgaggaaa
attcttgcgttgatggtgccggatgaaaatgggaaacgtttctctgtttttgacaaagat
aggaaagggtaccggcaggtagaattccgggatatcgtgattcttttgcgcaccacaaga
aactggtcggatatttttttggatgagctgttcatgttgggaattccggcattcgccgat
atgggaaccggtttcttcaagaccatcgaagtgcaggtgatactgtctcttttacagatt
atcgataatcctctgcaggatatccccttgctggcggtgctgcgttctcctatggttgcc
ttttctaccgaccaattggcagaactcaggctggcggaccggaaggcgtcactttatgag
gcgttgaaaaaattggctgaagagggtcaggaaagtacgaaagaaaaggcggcagcgttt
ctggagcaccttcagcgctggagagaaatgtccctctatttgtccacggaccaattgctc
tggcagctctatcgggacaccggttattacgggatggtgggggcaatgccggcaggagaa
cagcggcaggcaaacttaaggattctttttgagcgggccaggcagtttgaagagaccagt
tacaaagggctgttcaattttatccgctttattgataagctgaaggccagcagaggcgat
atgggaagcgctaaaatcctgggagagcacgacaatgtggtacgcatcatgagcatccat
aagagcaaggggctggagtttcccgtcgtgattcttgccgggtgcggaaagaaattcaac
ctgcaggatatgaacaaaagcattctggtgcaccaggacctgggcctgggggctgacgtt
gtagaccataagcggcgcttatcctggccgtcggcagccaaggaagccatccgggcgaaa
attaaggcggaaagcctttccgaggaaatgcgcatcctttatgtggccatgacaagagcc
cgggaaaaactgatcattaccggagcagtgaatgatgccgccaaagccgtaggcaggtgg
tccgtttctgccgggatacaggggagcaagcttccggactatgagatgctaaaaggtgct
aattacctggactggattggacctgcccttttaaggcataaaaactgcaccgtcctgttg
gattatctcaataccggcactcagttctgcggactgccaatggaggatgggtcccgttgg
agaatacaggtgtggaccaaaagcgatgtactcagcagcaggatttccgacgtgcatgag
gaaaatgagtttatgcgttggctggacagcctggagtcaacagaagagcctaccgattat
caggaggaaatatcgggaagattgagctgggattatccttatctcaaggcctcccgggta
ccggccaaggtatcggttaccgagttgaaaagacgtttccacgcggagcttgcggaacaa
acggtcccttttcctgatgatctgcccctcctggtaaaaaaacccctgttccttgaggaa
agaaaaggcctcagtgccgcagaaaccggtacggtactgcactttgtgatgcagcacttg
gattatggcagggaagatcttgccgcccaaatggaaaaaatggtggcaaaagatctcctc
accgctcagcaggcccggagtgtggacttggataaaatccgccgcttcctggagtcacct
ttggggaagaggatactggcttccggaaacatataccgggaagtacccttcaatatcgag
ataccctgccaggaactatatgcgggtttggttgatgaagcctgccaaggtgaaactctt
ctgctccagggagtcattgactgtttctttgtagaaagggacggcattgtcctgctggat
tataagactgattatgtacctgccgggggaattgatcggatcagagaacggtaccggctc
cagatcgactattatgcccgggccctggagatgttgaccgggaaaaaggtcaaggaaagg
tatatctacctgttctggaatggggaagtgctggagtattaa
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