Candidatus Formimonas warabiya: DCMF_03400
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Entry
DCMF_03400 CDS
T07208
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
fwa
Candidatus Formimonas warabiya
Pathway
fwa03410
Base excision repair
fwa03430
Mismatch repair
fwa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fwa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DCMF_03400
03430 Mismatch repair
DCMF_03400
03440 Homologous recombination
DCMF_03400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fwa03400
]
DCMF_03400
DNA repair and recombination proteins [BR:
fwa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
DCMF_03400
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DCMF_03400
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DCMF_03400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
ATW23963
UniProt:
A0A3G1KNC1
LinkDB
All DBs
Position
767173..770334
Genome browser
AA seq
1053 aa
AA seq
DB search
MPPSRKRWILAPYDCQLQFEISQKVKISPLLAQICINRGITSPEDVENFFHVNPSQLHSS
FSFNKMEQAVTCMEEAIANQEKILIYGDYDVDGVTGTSLLYLYLKSRQARVSYYIPDRKE
EGYGLNEEAVYWASREKFSLIVTVDCGISSVRETELANSLGLKIIITDHHQPPEILPAAL
AIINPKVKASKYPFPHLAGVGVAWKLAQGLEMHREKKENHEDAILKEFLDLVCLGTIADV
VPLTGENRVIVALGLKKMMEGQRPGIQALLSVTGLDNKPVTAGQVGFILAPRLNAAGRLS
SARLAVELLTSSLASESLERALVLDKENTLRQAVEGEIFQQALHMIDETVDLEEDYVIVL
AAPEWHAGVIGIAASRLVEKYHRPVVLIAIEGELAKGSARSIECFDIFLALRSCQEWLVQ
FGGHRLAAGIKLKEENIAAFRKAINTFARTVLSKDHLIPVVKIDLELDLNTNEQYYINDI
ERLAPFGAGNPLPVLAFRNLKIVEAKGVGVGAPHLKVKFESGGHFLDGIGFNLSHHLSWI
TIGSKVDVAVTLERNLWNGCEKIQFVLKDIQPHPVLISLSPAPDFDQEKGMVIPGIRADK
EENEDHPAFSALINRRTPRVSMALPLKEGRFLWYHAAAYNCRVGKSKTIILFSCPSQLGS
EYALAALHLGKLGISVGWADSRMAQEEKDQVWDAFTKGWIRVLFTTPEYLEAQDHDGSER
ADALIVVAIVDPFDSLLSGGEFMERCHEILRPGLTKGLVITTVSEKKNHLSLLEKTFNCP
DTYSDIKQARTSLVDGRGMRNREEYLLDLLQKEESCLVYLSLPSHVEELMSGMSRLGIRP
ESMTGCYGDQMPWQHQMVMKKIQKKVLRTVVTTRHLYGETDGLFDHVIFYHSPRNMFDFF
RFAGCGNGEKGAQIHLLYNTHDVAAINDVLQADFPDRDLLGKIYKGIKALSPYGRQVSGT
KEEILQRLKIDQDPCRKERAFDAWLSTMSELGLLKVSRQGNRFCLEFINNGNKCRLEDSF
RYREGLREKKAFDFWHHIALSPQLDQEIFDLLG
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atgccccccagcaggaaacggtggattttggctccctatgactgccaattgcagtttgag
atttctcagaaagtaaaaatttctccccttctagcccagatttgtatcaaccggggcatc
acttctccggaagacgttgagaatttttttcatgtgaacccatctcagcttcatagctct
ttttcatttaacaagatggaacaggcggtgacctgtatggaagaggccatcgccaaccag
gaaaaaattctgatttatggcgattatgatgtggacggtgtgacagggacatccctgctt
tatttatatttaaaaagcaggcaggctcgtgtgtcctattatattccggatcgcaaagaa
gaagggtacggccttaatgaggaagccgtctattgggcttcccgggaaaagttttcttta
atcgttacggtggattgcggaataagctctgtgcgggaaacagaattagccaattctttg
ggcttaaaaataattattacggatcatcatcagccgccggagattctcccggccgctctt
gccatcattaaccctaaggtgaaagcaagcaagtatccctttcctcatttggcgggggta
ggggtggcgtggaaactggcccaagggttagagatgcacagggagaagaaggaaaatcat
gaagacgctatcttaaaggaatttttagacctggtttgtttaggcaccattgccgacgtc
gtgcctttaacaggggaaaaccgggtgatcgtggccctgggcctgaaaaaaatgatggag
gggcagcggcccggcatccaggcactgctatccgtgacagggctggacaacaaaccggtc
acggcaggccaggtgggctttattctggcgccccggctcaatgcagcaggcaggctgtcc
agtgcccgtttagcggtggaactgcttacttcttctctggccagcgagtccctggaacgt
gccctggtgctggacaaggagaataccttgaggcaagcggtggagggagaaatatttcaa
caagcgttacacatgattgatgaaacagttgacttggaagaagattatgtcatcgttctc
gcggcgccggagtggcatgccggagtgatcgggattgccgcttcccggctggtggaaaaa
tatcatcgcccggtcgttctcattgccatagagggtgaattggccaagggaagtgcccga
agcattgaatgttttgatatttttctcgccttgagaagttgtcaagagtggttggtccag
tttggcggccacaggctggccgccgggatcaagttaaaagaagaaaatatcgctgctttt
cgtaaggccatcaatacttttgcccggaccgtgctgagcaaggatcatctcataccagtg
gtaaaaattgatttggagttggatctgaataccaatgaacaatactatatcaatgacatt
gaaagattagccccctttggtgcgggaaatcccctgccggttttagccttccgcaatttg
aaaattgttgaggccaaaggggtaggcgtgggtgccccacatttaaaggtaaagtttgaa
tcaggaggccattttttagacggcattggttttaatttatcccaccatctctcttggata
acaataggcagtaaagtggatgtggcggtaacgctggaaagaaatctatggaacggctgt
gaaaaaatccaattcgtcttaaaagatattcaaccccatccagtcctgatttccttatcc
ccggcgcctgattttgatcaagagaagggcatggtcatccctgggataagagcagacaag
gaggaaaatgaagatcatcctgcttttagtgccttgataaacaggagaactcctcgggta
tctatggctttacctcttaaagaaggaaggtttctttggtatcatgctgctgcctacaat
tgccgggtcggtaaaagtaagaccattattcttttctcctgtccttcccaacttgggagt
gaatacgcactggcggcgttacatttaggaaagctgggaatttccgtgggctgggcagac
agtaggatggctcaggaagaaaaggaccaggtctgggatgcctttacaaaaggttggatc
agagtattgtttactactccggagtatttagaagcccaggatcacgatggctcggaacgg
gctgatgctttaattgttgtggccatcgtagacccttttgactctttattatccggcggg
gaatttatggaacgctgtcacgaaattcttcgtcccggcctgacgaagggtttggtgatc
accactgtttccgagaaaaaaaaccatctcagcttattagaaaaaacatttaattgcccc
gacacatattctgatatcaaacaggccagaacttcccttgttgatggccggggcatgagg
aaccgggaagaatacctccttgatttgctccaaaaagaagaaagctgcctcgtctatctt
tcccttccttctcatgtggaagaactgatgagcgggatgtcccgtctaggcattaggccg
gaaagtatgacagggtgctatggggaccaaatgccgtggcagcatcagatggtaatgaaa
aagatacaaaaaaaggttttgcgtacggtggtgacgacgaggcatttgtatggagaaaca
gacggcctatttgatcatgtcatcttttatcattctccccggaacatgtttgattttttc
cgttttgccggctgcggaaacggggaaaagggtgctcaaattcacttgctctacaatacc
catgatgtggcagcgatcaatgatgtcttgcaggctgatttccccgatcgggacctttta
ggaaagatctataaaggaatcaaggccctttccccttacgggaggcaagtatccggcaca
aaggaagaaatcttacagagattaaagattgatcaggatccttgtcggaaggaaagggcc
tttgatgcctggctatctaccatgagtgagctgggtctgttaaaagtatcccggcaaggg
aaccgtttttgtttagaattcatcaataatggaaacaaatgtaggctagaagactctttt
cgctaccgggaaggtttaagggagaaaaaggcctttgatttttggcatcatattgccctt
tctcctcaacttgatcaggagatttttgatttgctgggttag
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