Candidatus Formimonas warabiya: DCMF_12090
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Entry
DCMF_12090 CDS
T07208
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fwa
Candidatus Formimonas warabiya
Brite
KEGG Orthology (KO) [BR:
fwa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fwa03016
]
DCMF_12090
Enzymes [BR:
fwa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DCMF_12090
Transfer RNA biogenesis [BR:
fwa03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DCMF_12090
Prokaryotic type
tRNA splicing ligases
DCMF_12090
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Dicers_N
Motif
Other DBs
NCBI-ProteinID:
ATW25414
UniProt:
A0A3G1KSM6
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All DBs
Position
complement(2615427..2616611)
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AA seq
394 aa
AA seq
DB search
MIEIKGKYNTAKVFTDHVEEKAAEQIRELCNQEFARESIIRIMPDTHAGAGCTIGTTMTV
QDKIIPNLVGVDIGCGMHVSLLEKTQVDFGKLDKTIRKYVPSGFDVRETPHEFNAFVNLH
DLKSKDHLDLKRARLSIGTLGGGNHFIEMNLDEEENLYLVIHSGSRYLGKQIAEYYQDRA
IKEITRKNNDRIIAELKGKSREKEIQGKIEKGKTKINKALSYVEGESFSEYINDMRIAQK
YAECNRKAIAEVIVREMGFRVIDSFTTIHNYIDLDEMILRKGAISAPKGEVVIIPINMRD
GSILATGKGNTLWNQSAPHGAGRLMSRKQARCSLSLEEFKKSMEGIYTTSLSRETLDEAP
FAYKPMEEIIANIQDTVEINRIIKPIYNFKAADD
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgatagaaattaaaggaaaatacaacacggcaaaggtgtttaccgatcatgtggaagag
aaggctgcagaacaaatacgggagttgtgcaatcaggaatttgcccgagaaagcataatc
aggattatgccggatacccatgcgggagccggatgcaccatcggtaccacgatgaccgtt
caggataaaatcattcctaacctggtcggagttgatattggctgcggcatgcatgtcagc
ctgctggaaaaaacgcaggttgactttggcaaactggacaagaccattcggaagtatgtg
ccaagtggatttgatgtccgggaaacgccccatgaatttaatgcttttgtcaatctgcat
gacctgaaatccaaggatcatctggatttaaaacgggcccggctcagcatcggaaccctg
gggggtgggaatcattttattgaaatgaacctagacgaagaagaaaatttatatttggtg
atacattccggaagccgttatttaggaaaacaaatcgcggagtattatcaggacagggcc
ataaaggaaattaccagaaaaaataatgacagaattattgctgaacttaagggaaaaagc
agagaaaaagaaatacagggtaaaattgagaagggaaaaactaaaattaataaggcccta
tcttatgtagaaggggagagcttttccgaatacatcaatgacatgcgcattgcccaaaaa
tatgctgaatgcaacagaaaggccatcgcggaagtaattgtccgggagatgggctttcgt
gtgatcgacagctttacgaccatacacaattatatcgatctggatgaaatgatcttgcgc
aaaggagccatttccgccccaaaaggggaggttgtaatcattcccatcaatatgagggac
ggaagtatcctggcaaccggaaaaggaaataccctgtggaatcaatcggctccccatggc
gcagggagattaatgagcagaaaacaggcgagatgcagcctgtctttggaggaattcaaa
aagtccatggaggggatctatacgacttctttgtccagagagaccctggatgaggctccc
tttgcctataagcccatggaggagatcatcgccaatatccaggatactgttgaaatcaac
cggatcattaaaccgatttacaattttaaagcagccgacgattaa
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