Candidatus Formimonas warabiya: DCMF_13050
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Entry
DCMF_13050 CDS
T07208
Name
(GenBank) chaperonin GroL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
fwa
Candidatus Formimonas warabiya
Pathway
fwa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fwa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DCMF_13050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fwa03019
]
DCMF_13050
03110 Chaperones and folding catalysts [BR:
fwa03110
]
DCMF_13050
03029 Mitochondrial biogenesis [BR:
fwa03029
]
DCMF_13050
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
fwa04147
]
DCMF_13050
Enzymes [BR:
fwa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
DCMF_13050
Messenger RNA biogenesis [BR:
fwa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
DCMF_13050
Chaperones and folding catalysts [BR:
fwa03110
]
Heat shock proteins
HSP60 / Chaperonin
DCMF_13050
Mitochondrial biogenesis [BR:
fwa03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
DCMF_13050
Exosome [BR:
fwa04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
DCMF_13050
Exosomal proteins of other body fluids (saliva and urine)
DCMF_13050
Exosomal proteins of breast cancer cells
DCMF_13050
Exosomal proteins of colorectal cancer cells
DCMF_13050
Exosomal proteins of bladder cancer cells
DCMF_13050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
VP4_helical
DUF2209
Motif
Other DBs
NCBI-ProteinID:
ATW25561
UniProt:
A0A3G1KSY1
LinkDB
All DBs
Position
complement(2820051..2821676)
Genome browser
AA seq
541 aa
AA seq
DB search
MAKQIVFREDARHALEKGVNALANAVKVTLGPKGRNVVLEKKFGSPMITNDGVTIAREIE
LEDPIENMGAQLVKEVATKTNDVAGDGTTTACLLAQAIIREGMKNVAAGANPMFLKKGIE
KAVAAALVELKANARKVENKAAIAQVASISANDPEIGTLIADAMDKVGNDGVITVEESQV
FETTHEVVEGMQFDRGYISQYMITDTDKMEAVLNDPYILITDKKISAIADILPVLEKVVQ
SGKQMLIVAEDVEGEALPTLIVNKLRGTFTCVAVKAPGFGDRRKAMLGDIATLTGGQVIS
EEVGLKLENVTLDMLGKARQVKVGKENTTIIDGAGSSADIEARVSQIRKQYEESTSEFDK
EKLQERLAKLAGGVAVIKVGAATETELKEKKLRIEDALSATRAAVEEGIVSGGGAALINV
LDAVDAVAAEGDVLTGVNIIKKALEEPLKQIAYNAGAEGAVVVEKVKAAQKGIGFNAATG
EFEDMIAAGIVDPAKVTRSALQNAASIAAMLLTTETVVADIPKKEEAHAGGMPGGMPPGM
M
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaacaaatcgtttttcgggaagatgcgcgtcatgccctggaaaaaggggttaat
gctttagcaaatgccgtaaaagtaacccttggccccaaaggccgcaatgttgtattggaa
aagaagtttggttctcccatgattaccaatgacggtgtcaccattgccagagaaatcgaa
ttggaagatcccattgaaaacatgggtgcccagttggtgaaagaagtcgctaccaaaacc
aacgatgtggccggtgacggtaccaccaccgcttgcctccttgcccaggcaattatccgg
gaaggtatgaaaaatgtggccgcgggagccaaccccatgttcctgaaaaaagggattgag
aaggctgtggctgctgcactcgtggaattaaaagcgaatgcgagaaaagtagaaaataaa
gcggctattgcccaggtggcttctatctctgccaacgatccggaaatcggcactttgatt
gccgatgccatggataaagtgggcaacgacggggttatcaccgttgaagagagccaagtt
tttgaaaccacccatgaagtagtagaagggatgcagtttgacagaggatatatttcccag
tatatgatcacggataccgataaaatggaagcagtattaaatgatccctacatactgatt
accgacaagaaaatttccgccattgccgatattttgcctgtgctggaaaaagtggttcag
tccggaaaacaaatgctgattgtggcagaagatgtagaaggggaagcgctgcctaccttg
atcgtaaataaactaagaggcacctttacctgtgtcgccgtgaaagcccccggtttcggt
gaccgccggaaagcgatgttaggtgacattgccactctcaccggtggacaggttatttct
gaagaagtaggcttaaaattagaaaacgtgaccctggatatgctgggtaaagcccgtcag
gtaaaagttggtaaagaaaacaccacgatcattgatggggcaggaagttctgccgatatc
gaggcccgggtttcccagattagaaaacagtatgaagagtccacttctgaatttgataag
gaaaagcttcaggagcggttggccaaattggccggcggcgtagccgtgattaaagttggt
gctgctacggaaaccgaattaaaggaaaagaaactgcgtattgaagatgctttatccgca
acgagagctgctgtagaagaaggcattgtatccggtggtggcgccgctttaattaatgtc
cttgatgctgtggatgctgttgcggccgaaggagatgtcctgaccggagtgaacatcatt
aagaaagctttggaagagcctctgaagcagattgcctataatgccggtgcggaaggcgct
gtcgttgtagaaaaagtgaaagctgcccaaaaagggattggctttaatgctgctaccggg
gaatttgaagatatgattgcagccggtattgtggatccggcgaaagtaacccgctccgcc
ctgcagaatgcggcttccattgctgccatgctgctgacaacggaaaccgtagtggccgat
attcccaaaaaggaagaagcccatgctggtggaatgcccggcggcatgcctccgggaatg
atgtaa
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