Candidatus Formimonas warabiya: DCMF_21460
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Entry
DCMF_21460 CDS
T07208
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fwa
Candidatus Formimonas warabiya
Pathway
fwa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fwa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DCMF_21460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fwa03400
]
DCMF_21460
Enzymes [BR:
fwa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DCMF_21460
DNA repair and recombination proteins [BR:
fwa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DCMF_21460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
AAA_30
MFD_D3
RecG_dom3_C
UB2H
DUF3638
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ATW26988
UniProt:
A0A3G1KWW6
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All DBs
Position
4735839..4739324
Genome browser
AA seq
1161 aa
AA seq
DB search
MICSQLVWPWKEIRQYRQLKENLRPGAGHLVVGLTDLPRSCWTVALEEDVHVPILVITSS
AEAAKKTYADLVSLAPQKQVFFFPHVELLPYEVYARNLEIGAQRITALHKMAGQEPVVVV
TSVEALIRRTVSRETFNAHTLTLATGSRIDILQLSVLFINMGYSKENLVEIPGTFSIRGG
IIDVYPFTENHPVRVELFDDEIESIRFFDPDTQRSLEEIGQVILPPARELPANSELLISA
GRRLEQELTRVLPSYSGAAKRNLREKFSFYVEQMSQGIWMDGMEQFLLYFYPKAGSVLNY
LPPTGLVIVHEPDSVRQTVEKMRKQMDSWYYDLLEEGKILPSFGQNFLDFAELKEVITGY
PFVLLAQLPETAGLPVQDKHDLISRELPSYKGQMHLLAEDLKYYQQQKYHILFSASSSVR
KEKLKELSQELGMEGIEIIDAALSRGFESPVTKMLVLSETDILGQTTHAKARRPLRKGEK
IATFLDLKVGDYVVHVNHGIGRYLGVVRLDIGDAQRDYFDIRYAGEDKLYVPTDQVDLIQ
KYVGADGQTPKVYKLGGTEWNRVKTKVRNSVQDMAKELLALYAAREAVKGHGFSTDTVWQ
KEFEDAFPYPETPDQLRAVEEIKKDMENSKPMERLLCGDVGYGKTEVALRAAFKAVMDGK
QVAVLVPTTVLAQQHQRTFEERFSGMPVTIGVLSRFKSAKETAQTLKDLAQGMVDIVIGT
HRLISKDVRFKDLGLLIIDEEQRFGVGHKEKIKNMKQNIDVLTLTATPIPRTLHMSLVGV
RDMSVIETPPEDRQPVQTYVMEYQDRVIKEAISREIGRGGQVYFVHNRINNIYRSASQIQ
ELVPEAKIVVGHGQMKEHELETVMLDFVEGKYNVLVCTTIVESGLDIPNVNTLIVDEADH
LGLSQLYQLRGRVGRSNRQAFAYFTYRKDKILSGIAKKRLTAIRDFTELGSGFKIAMRDM
EIRGAGNILGPEQHGHILAVGFDLYCRLVEEEVNKQRQGQTQALEKITPSLELNMDAYIP
DNYVLESDLKIELYKRLAAAEELKDVDDLEYEVEDRFGVMPEVVRNLFVLGKLKVLAQKL
RINGIFQQKQLITIRFAPDHAVVGNHLAEIAQEFGRRISFSVSGDLEIRVNAGGCLPPRV
LQILLSILTKLLGFIPKAGVV
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgatttgctcgcagcttgtgtggccatggaaagagattaggcagtaccgccaattaaag
gagaatttacgccccggggccggccatttggtcgtcggtctgacggatttaccccggtct
tgctggacggtagcactggaagaggatgtgcacgtaccgattctggtgattacctcctcc
gccgaagcggctaaaaagacctatgcggatttggtatccctggctccccaaaaacaagta
ttttttttcccccatgtggaacttctcccctatgaagtttatgcccgtaatctggaaatt
ggggctcaaaggatcaccgccctgcataaaatggccggccaggagccggtagttgttgtc
acttcggtagaggccttaatcagaagaacggtctcccgtgagacttttaacgcacatacg
cttactttagcaaccggttccagaatcgatattcttcagttgtctgttctctttatcaat
atgggctattctaaagaaaacctggtggaaattccgggcacattcagcatcagaggcggc
atcattgatgtttatccttttacggaaaatcaccctgtacgcgtggaattatttgacgac
gaaattgaatcgattcgttttttcgatccggacacccagcgttctttagaagaaattggt
caagtcattttgcccccggcccgggaacttcccgcaaattcggaattgcttatttcggcg
ggaagaagattggagcaagaattgacccgtgtcctgccctcttactccggagcagcgaaa
aggaatctcagggagaaattttctttctatgtggagcaaatgagccagggaatctggatg
gacggcatggagcagttcttactttatttttaccccaaagcaggaagcgtgctgaattat
cttccccccacgggattggtaattgtgcatgaaccggatagtgtgcgtcaaaccgtagaa
aaaatgagaaaacaaatggactcctggtattatgaccttttggaggaaggaaaaatactc
ccttcctttgggcaaaattttcttgattttgcggagttaaaagaggtgataaccggttat
ccttttgttctgctggctcaattgccggaaacggcaggactgcctgtgcaggataaacat
gacttgatatccagggagcttccctcctataaaggacaaatgcatcttttagcggaggat
ctcaaatattatcagcagcagaaataccacatcctcttttcggccagttcttccgtaaga
aaagagaaactaaaggaactctcccaggaattaggcatggaagggatcgaaatcatcgat
gccgcactttcccgcggttttgaaagcccggtcaccaaaatgctggttctaagcgaaacg
gatattttggggcaaaccacccatgccaaggcccgccggccattgcgcaaaggggaaaaa
atagccacttttcttgatctcaaagtaggtgactatgtggttcatgtgaaccatggcatc
gggcgttatttaggcgttgtgcgcttggatatcggcgatgcccaacgggattattttgat
attcgctatgccggggaggataaattgtatgttcccaccgatcaggtggatttaattcaa
aagtatgtgggagcggacggccagacgccgaaggtttataaattgggcggcacggaatgg
aaccgggtaaaaaccaaggtgcggaattcggtccaggatatggccaaggaattattggcc
ctctatgcggccagagaagctgtgaaagggcatggcttctctacggacacagtctggcaa
aaggagtttgaagacgcctttccttacccggagacgcccgatcaattacgggccgtggaa
gagatcaagaaagacatggaaaacagcaagcctatggagcgattgctctgcggagatgtg
ggctacgggaaaacggaagtggctttaagagcggcttttaaagccgtgatggacggaaaa
caggtagccgtattggtccccaccaccgtgctggcccaacagcaccaaagaacttttgaa
gaaaggttttccggcatgcctgtgaccatcggggtgctgagcaggtttaaaagtgccaaa
gaaacggcgcagaccttaaaagatctggcccagggcatggtcgatattgttatcggcacc
caccggctcatctccaaagatgtcaggttcaaagatctagggctgctcattatcgacgag
gaacagcgcttcggagtaggccataaagaaaagatcaagaacatgaaacaaaatattgac
gtactcacgctgaccgctacgcccattccccggaccttgcacatgtcattggtgggcgtt
cgtgatatgagcgtgattgagacgcctccggaagaccggcagcctgtgcagacttacgta
atggaataccaggatcgtgtgatcaaggaggcgatttcccgggagatcggccggggcggc
caagtatattttgtgcataacaggattaacaacatttatcggagcgccagccaaatccag
gaactggtcccggaagcgaaaatcgtcgtgggccacggccagatgaaggaacatgaactg
gaaaccgtgatgctggattttgtggaaggaaaatataacgtcctggtctgtaccaccatt
gtagaatcaggactggacattcccaatgtaaatacgctgatcgtggatgaagcggatcat
ttgggactatcccagctttatcagctgcgcggcagggtaggccggtccaaccggcaggct
tttgcgtatttcacctatcggaaggataaaatattaagcggcattgccaaaaaacggttg
acggcgatccgggattttaccgaactgggttccggattcaaaattgccatgcgggatatg
gagattagaggggcgggaaatattctgggcccggagcagcatggccatattctggccgta
ggttttgatctctactgccgtttggtggaagaggaagtgaataaacagcggcaaggacag
acccaggctttggaaaaaatcaccccttccctggagttaaatatggatgcctatatcccg
gacaattacgtgctggaatccgatttaaaaatagaattatataaacgtctggccgcagcg
gaagaacttaaggatgtggacgacctggaatatgaagtggaagatcgttttggggtgatg
cctgaagtggtgcgaaatttattcgtattagggaagctaaaggttctggcccaaaaactc
agaattaatgggatcttccagcaaaagcaactgatcacgattcgttttgccccggatcac
gccgtggtgggcaaccacttggcggaaatcgcccaggagtttggccggcgcatttccttc
agcgtatccggagatttggaaatacgggtaaatgcagggggatgtctccccccacgggta
ttgcagatcttgctgagcattttaacaaaattattaggttttatccctaaggccggcgtg
gtataa
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