Candidatus Formimonas warabiya: DCMF_22270
Help
Entry
DCMF_22270 CDS
T07208
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fwa
Candidatus Formimonas warabiya
Pathway
fwa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fwa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DCMF_22270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fwa03021
]
DCMF_22270
03400 DNA repair and recombination proteins [BR:
fwa03400
]
DCMF_22270
Enzymes [BR:
fwa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DCMF_22270
Transcription machinery [BR:
fwa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DCMF_22270
DNA repair and recombination proteins [BR:
fwa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DCMF_22270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ATW27109
UniProt:
A0A3G1KXL4
LinkDB
All DBs
Position
4897795..4901334
Genome browser
AA seq
1179 aa
AA seq
DB search
MLDVSNFDRMRIGLASPEQIRQWSFGEVKKPETINYRTLKPERDGLFCEKIFGPTRDWEC
HCGKYKRVRYKGIVCDRCGVEVTRSKVRRERLGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRSLEKVLYFVSYIVLDPGDTPLMKKQLLTETEYREYREKYGQRFQAGMGAEAIKAMLM
EMELEKLAQELRTELKEVSGQRKIRAIRRLEVVEAFLISNNKPEWMVLDVVPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKFHQCGLPKE
MALELFKPFVMKRLVNDGHAHNIKSAKRMVERVRPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGRALQIHPLVCTAYNADFDGDQMAVHVPLAAEAQAEARLLMLSAYNIL
NPKDGRPVAVPTQDMVLGSYYLTAVKEGAKGEGKAFVGYNEAYLAYLNGVVDLHARIIVP
KPVEWDFSIENKQEKEFEIDEYGRFKKFETTVGRLIFNYEIPLPRALGYYNSEVDKKTLG
KIVDRCYRKMGISAAAQLIDGIKKLGFTYSTRAGITIGVSDIQVPEAKKEIMANSEATVE
QVEDQYRRGLITEEERYQKVIGVWNQATEDVTKALMAHLDKFNPIFMMANSGARGNVQQI
RQLAGARGLMADPSGRIIDLPIKANFREGLTVLEFFISTHGARKGLADTALRTADSGYLT
RRLVDVAQDVIVREDDCGDTQGVWVDEIKDVEPLAERIEGRIANKEIIDERTGEVLASPG
MEISEEKANQIEAYLSTLPVEKRKVNIRSVLTCRTKYGVCRKCYGRNLATGSSVDIGEAV
GIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVEELFEARKPKGQGIIAETDGEVK
VFENKGKREIRIFRDGEEKDSYSVPYGSRLKVYDGLWVEAGDELTEGSVNPHDLLKVKGI
RGVQMYLLREVQRVYRLQGVDINDKHIEVMIRQMLKKVKIEESGDTGLLPGALVDSFEFE
AKNQEALDQMLQPAMARPVLLGITKASLATDSFLSAASFQETTRVLTDAAIKGKVDPLLG
LKENVIIGKLIPAGTGMSRYRNIKVLSPDQMEEAEVSPS
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
ttgttagatgttagtaactttgatcgcatgcgaattgggctagcatcaccggaacaaatt
cggcagtggtcctttggagaggtgaagaaacccgagaccattaattaccggacattaaag
ccggaacgtgacgggctgttctgtgaaaaaatattcggccctaccagggactgggagtgt
cattgcgggaagtacaaacgggtacgctataagggaattgtttgtgaccggtgcggcgtt
gaggtgacccggtcaaaagtacgtcgggaaagattggggcatatagaactggctgctccc
gtatcccatatctggtattttaaaggcatccccagccggatggggctattattggatatg
tccccccgttccctggaaaaggtcttgtattttgtttcctatattgttttagatcccggg
gatacccctttgatgaaaaaacaactgcttacggaaacagaataccgggaataccgggaa
aaatacggccagcgttttcaagcaggcatgggtgcggaagccattaaggccatgctcatg
gaaatggagctggaaaaactggcccaggaactgcgtacggaactgaaggaagtaagcggg
cagagaaaaatcagagccatccggcgtttggaggtcgtagaggccttcctgatttccaac
aacaaaccggagtggatggttttggatgtggtccccgtgatcccgccggaattgcggccc
atggtccagttggacggaggaagattcgccacgtcggatttaaatgatttataccggcgg
gtgattaaccggaataatcgcttgaaacggcttttggatttaggggcaccggatattatt
gtgcgcaatgagaagcgcatgctccaggaagcggtggatgctttaattgataacgggcgg
cggggcagaccggtgacaggaccgggcaatcgtcctttaaaatccttaagcgatatgtta
aaaggaaaacaaggccggttccgtcaaaacttgctgggaaaacgggtggattactcggga
cggtccgtgatcgtggtaggaccggagctgaaattccatcagtgcggcttgcctaaagaa
atggccttggaattatttaagccttttgtgatgaaacggctggtgaatgacggccatgcc
cataatatcaagagcgccaaaagaatggtggaaagagttcgtccggaagtatgggacgta
ctggaggaagtgattaaggagcacccagtcttgctgaaccgtgctccaaccttacaccgc
ttaggtattcaggcttttgagccggttttggtggagggacgcgccctgcaaattcacccc
ctggtatgcacggcctataacgccgacttcgacggagaccagatggctgttcacgtaccc
ctggcggcagaagcgcaggcggaggcccgtctcttgatgctgtccgcctataatattctc
aaccccaaagatggccgtccggtggcggttcctacccaggacatggtccttggttcttat
tacttgaccgcggttaaggaaggggcaaaaggagaaggcaaggcttttgttggctataat
gaggcttacctggcctatctgaacggagtcgtggatttgcatgccaggatcattgtgccg
aagcctgtggagtgggacttcagtattgaaaataaacaagaaaaagagtttgaaatagac
gaatatggccggtttaaaaagtttgaaaccactgtgggcagactaatttttaattatgaa
attccattaccccgggcattgggctactacaacagcgaggtcgataaaaaaaccttgggg
aaaattgtggaccgatgttaccggaagatgggaatttctgccgcggcccaattgattgac
ggtattaaaaagcttgggtttacctattccacccgggccggaataaccattggggtgagc
gatattcaggttcctgaagccaagaaagagattatggccaattcggaagcaaccgtggaa
caggtggaagatcagtaccgccgcggtttgattacggaagaggagcgttatcagaaagta
atcggggtctggaaccaggccacggaagatgtcacaaaggccttaatggcccatctggat
aaatttaaccccatctttatgatggccaactccggggcccggggtaatgtgcagcagatc
cggcagctggctggagcccgtggcttaatggccgacccttccgggcgcattatcgacctg
cccatcaaagccaatttccgggaaggtttaacggtactggagtttttcatctccacccac
ggcgccagaaaaggtttggcagataccgcactgcggacggccgactccggttatttgacc
cgtcgtttggtggatgtggcccaagatgtgatcgtccgggaagacgactgcggcgatacc
caaggggtctgggtcgatgaaattaaagatgtggagcctttggccgagcggattgaaggc
aggattgccaataaggagattatcgatgaacgtaccggtgaagtattggcgtctcccggg
atggaaataagtgaagaaaaagccaaccaaattgaggcctacctgagtaccttgcctgtg
gaaaaacggaaagtaaacatccgctccgtgctcacctgccggaccaaatacggcgtgtgc
cggaagtgttatggacggaacctggccacaggatcatcggtagatatcggggaagcggtg
ggcattattgctgcccagtccatcggggagccgggaacccagttgaccatgagaactttc
cataccggtggggtagccggggacgatattactcaaggtttgccccgggtggaggaatta
tttgaagccagaaaacccaaaggtcaagggatcattgcggaaaccgacggggaagtcaag
gtttttgagaacaaaggaaaacgggaaatcaggattttccgggacggagaagaaaaagac
agctattccgttccttatggctcccggctaaaggtatatgacggactctgggtggaagca
ggggatgagctgaccgagggttcggtgaacccccatgatttgctcaaggtgaaagggatt
cgcggggttcagatgtatcttttaagagaggttcaaagggtataccggcttcagggtgtg
gacatcaatgataagcatattgaagtgatgatccggcagatgctgaaaaaggtaaagatt
gaggaatcaggagataccggcttgctcccgggtgccctggtggatagttttgaatttgaa
gcgaaaaaccaggaagctctggaccaaatgctgcagccggccatggcccgtccggtgctg
ttgggtattaccaaggcgtctttggccacggattccttcttgtctgccgcttccttccag
gaaacaaccagggttttgacggatgcggccattaaaggcaaggtagaccccctcttgggg
ttgaaagaaaatgtgatcattgggaaactaattcctgcgggtaccggcatgtcccgttac
cgtaatatcaaagtgttatctccggatcagatggaagaagcggaagtgtctccatcttga
DBGET
integrated database retrieval system
