Fusobacterium watanabei: CCUG74246_01825
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Entry
CCUG74246_01825 CDS
T11464
Symbol
srmB
Name
(GenBank) Superfamily II DNA and RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fwt Fusobacterium watanabei
Pathway
fwt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fwt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCUG74246_01825 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fwt03019
]
CCUG74246_01825 (srmB)
03009 Ribosome biogenesis [BR:
fwt03009
]
CCUG74246_01825 (srmB)
Enzymes [BR:
fwt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CCUG74246_01825 (srmB)
Messenger RNA biogenesis [BR:
fwt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CCUG74246_01825 (srmB)
Ribosome biogenesis [BR:
fwt03009
]
Prokaryotic type
rRNA helicases
CCUG74246_01825 (srmB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DeaD_dimer
AAA_22
NDK
2H-SAK
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CAM2393781
LinkDB
All DBs
Position
CCUG74246:392941..394527
Genome browser
AA seq
528 aa
AA seq
DB search
MEQLEKLKEFRDLGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKT
AAFSLPIIENFENLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQR
KLIKTGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNE
DKRMLFFSATMPDEIMKVAKNHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRI
IDLTKEFYGIVFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINIL
VATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQ
IQKAVKKEIKKEKLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLKMEDAENI
VASLLKLSYSDVLDESNYNEISPVKMEDTGKTRLFIAMGRKDGMTPKKLVEFIVKKAKVK
QSYIKNAEVYEGFSFVSVPFKEAEIIVEAFAKNRKGKKPLIEKAKSKK
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atggaacaattagaaaaattaaaagaatttagagatttagggcttagtgaaaaggtgtta
aaagtgttatcaaaaaaaggatatgaatctcctacacctatacaaagattaacaatacct
gctcttttaaaaaatgataaagacataataggacaagcacaaactgggacaggtaagact
gctgctttttctttaccaataatagagaactttgaaaacttagaacatatacaagcgatc
gttttaactccaacaagagaattagctttacaagtggctgaggaaatgaatagtttaagt
acaagtaaaaagatgaaagtgattcctgtctatggtggacaatcaatagacatacaaaga
aaacttatcaaaactggtgtagatgttgttgtaggtacacctggtagagttatagattta
attgaaagaaaattattaaaattaaattcattaaaatattttattttagatgaagcagat
gaaatgcttaatatgggttttgttgaagatatagaaaaaatattaacttttacaaatgaa
gataaaagaatgttatttttctctgcaactatgcctgatgaaattatgaaggttgctaaa
aatcatatgaaggaatatgaagttttagctgttaaaagtagagaacttacaacagattta
acagaacaaatatattttgaagtaaacgaaagagataagtttgaagcactatgtagaatt
atagatttaacaaaagaattttatggaattgttttttgcagaacaaagactgatgtaaat
gaaattgttggaagattaaatgacagaggttatgatgccgaaggtctacatggagatata
ggtcaaaattatagagaagttactttaaaaagatttaaaactaagaaaataaatatcctt
gttgcaacagatgtagctgcaagaggtatagatatcaacgatttaagtcatgttataaac
tatgctattccacaagaagttgaaagttatgtacatagaatagggagaactgggcgtgct
ggtaaagagggaactgctataacttttataactccacaagagtatagaagacttttacaa
attcaaaaagctgttaaaaaggaaattaaaaaagaaaaattacctgatgttaaagatgtt
attcaagctaaaaagtttagaataatagatgacataggacaaattttaatagataatgat
tatgataaatttaaaaaattagctaaagacttacttaaaatggaagatgcagaaaatatt
gttgcctctcttttaaaattatcatacagtgatgttttagatgaaagcaattacaatgaa
atctctcctgtcaaaatggaagatactggcaaaacaaggttatttattgctatgggaaga
aaagatggaatgactcctaagaaattagttgaatttattgtcaaaaaagcaaaagtaaaa
caaagctatattaaaaatgcagaagtctatgaaggtttctcttttgtttctgtacctttt
aaagaagccgaaataatagttgaggcttttgctaaaaatagaaaaggaaagaagccatta
atagaaaaagcaaagtctaaaaagtaa
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