Flammeovirga yaeyamensis: KMW28_00105
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Entry
KMW28_00105 CDS
T07356
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
fya
Flammeovirga yaeyamensis
Pathway
fya03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fya00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KMW28_00105 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fya03021
]
KMW28_00105 (rho)
03019 Messenger RNA biogenesis [BR:
fya03019
]
KMW28_00105 (rho)
Transcription machinery [BR:
fya03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
KMW28_00105 (rho)
Messenger RNA biogenesis [BR:
fya03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KMW28_00105 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
S1CSD-TOTE-2
NACHT
OB_RNB
AAA_25
SAP_new25
AAA
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QWG02023
UniProt:
A0AAX1N358
LinkDB
All DBs
Position
1:26400..28124
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AA seq
574 aa
AA seq
DB search
MYTRKLLEARLLSELKDIAESLGMKNFSNLRKKELIERIEKHVNATSEKKSPEGSAAPAP
ETKQPAAPASNDKETTQKTAPSTPSDKAPEKRLTRRKQQSQPAQRVKRENVKKTPPPQKA
GNKKKKKGGNQQQQHVQVTHDDIMSMEEIDLGIDAFDDLPDFDMFLDDDNDEGLPTLEQE
KETASQQKALEPKKEQPKVSVKDFDGVIDSEGVLEIMSDGFGFLRSSDYNYLAGPDDIYV
SPSQIKLFGLKTGDTVKGSIRPPKDGEKYFALLKVDTVNGKTTEEIRDRIPFEYLTPLFP
QDQLHLSTKPQIYSTRILDLFAPIGKGQRGMIVAQPKTGKTVLLKEVANAIAQNHPECYL
IILLIDERPEEVTDMQRSVNAEVIASTFDETADKHVKVSSLVLEKAKRMVECSHDVVILL
DSITRLARAYNTVAPSSGKILSGGVDANALHKPKRFFGAARNVENGGSLTIISTALIDTG
SKMDEVIFEEFKGTGNMELQLDRKLANKRVYPAIDIPMSGTRREDMLMDKDTLQRVWIMR
RMMSDMKSTEAMEFLQSNMRGTRSNEDFLISMNK
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgtatacaagaaagctactagaggctagattgctatccgaattaaaggatattgcagaa
agtcttggcatgaaaaatttcagtaaccttcgcaagaaagagttaattgaaagaatagag
aagcatgtcaatgctacttccgagaaaaaatctccggaaggatctgctgcacctgcccct
gaaacaaaacagccagcagcccctgcctctaacgataaagagactactcaaaaaactgct
ccatctaccccttcagataaagcacctgaaaaaaggttaacaagacgcaaacaacaaagt
cagccagcccaaagagtgaaaagagagaatgttaagaaaacgcctccgcctcaaaaagct
ggtaataagaaaaagaagaaaggggggaatcaacaacaacaacacgttcaagtaacccac
gacgatattatgtcgatggaagaaatcgatttaggtattgatgcattcgacgatttgcct
gatttcgatatgttcttggatgatgacaatgatgaagggctaccaaccttagagcaagaa
aaagaaacagcaagtcaacaaaaagcacttgaacctaaaaaagaacaacctaaagtttct
gtaaaagattttgatggtgtaatcgatagcgaaggtgtcttggaaattatgtctgatgga
ttcggtttcctaagatcatctgattataattatttggctggacctgacgatatttatgtt
tctccatctcaaattaaattatttggactaaagacaggtgatactgtaaaaggtagtatc
cgtcctccaaaagatggtgaaaaatattttgccttattaaaagtagataccgtaaacggt
aaaactactgaggaaattagagaccgtattccttttgaatacttaactccattgttccct
caagaccaattacacttatctacaaaacctcaaatatattctacacgtatccttgatctt
tttgctcctattggtaaaggtcaacgtggtatgattgtagcacagcctaaaactggtaaa
acagtacttcttaaagaagtggccaatgcaattgcacaaaaccaccctgaatgttatttg
attatccttctaattgacgaacgtccggaagaggtaacagacatgcagcgtagtgtaaat
gcagaagttattgcttcaactttcgacgaaactgccgacaaacacgttaaggtttcttcg
ttagtacttgaaaaagcaaagagaatggtagaatgttctcatgatgtagtcattctattg
gactcgattactcgtttggctagagcatacaacacagtggctccttcatcgggtaaaatc
ctttctggtggtgtggatgcaaacgctttacacaaaccaaaaagattctttggtgcagct
cgtaacgtagaaaacggtggttctttaactattatttctactgccctaattgataccggt
tctaaaatggacgaagttatctttgaagaattcaaaggtacaggtaacatggaacttcaa
ttggatagaaagctggcgaacaagcgtgtttaccctgctattgatattccaatgtcgggt
actcgtagagaagatatgttgatggataaagatacattacaacgtgtatggattatgcgt
agaatgatgtctgatatgaaatcgactgaagccatggaattcttacaaagtaatatgaga
ggtactcgttctaatgaagatttcttgatctccatgaataaatag
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