Flammeovirga yaeyamensis: KMW28_04720
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Entry
KMW28_04720 CDS
T07356
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fya
Flammeovirga yaeyamensis
Pathway
fya03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fya00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KMW28_04720 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fya03400
]
KMW28_04720 (mfd)
Enzymes [BR:
fya01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KMW28_04720 (mfd)
DNA repair and recombination proteins [BR:
fya03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KMW28_04720 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
QWG02888
UniProt:
A0AAX1NB37
LinkDB
All DBs
Position
1:complement(1217367..1220732)
Genome browser
AA seq
1121 aa
AA seq
DB search
MGDLQDLRQIELKDLIKAYQSDSTTGILLNQLKKPESASYLKGLCGSLDSIIASTVYNKL
KGCHVFVMHDVEEAMYFLNDLQNLLPDADVLYFPSSYKRPFEFTEVENANVLQRAETLST
LNEKKNKGALLVTHPPALTEKVINKKSLVENTYVARVGEDIDQNFIRELLIEYGFEPTDF
VYEAGQFAIRGGIIDIYSFANELPFRIELFGDEIESIRTFDPVTQLSQEDKEHAPIVPNV
HNKLMQEVRESLLDFLPDATVWIKDYELLVDTLDQFFDKATAKFDEILEVSGGTQVINSP
EELFETRKGFTKKLSSLHRILFGNRKGIRNAETIAFDAKPQPSFNKNFHLLSETLEKQQL
SGIRNIIVSDLPKQLERIQTIFDEIKPDLFVQELNLSLRGGFIDQQMNVACFTDHQIFER
FHAAKSKKKFSKSKSMTLKELRELKAGDFVVHMDHGVGRFAGMEKIKAGDKEQESIRLVY
RDNDLLYLSLHALHKISKYSGQEGRQPTVSKLGSPEWENKKKRAKKRVKDIAAELISLYA
KRRESKGYQFEQDGYLQAELESSFLYEDTPDQAKATQDVKEDMEKPYPMDRLVCGDVGFG
KTEVAVRAAFKAVCDSKQVAILVPTTILAMQHYKTFVQRMGDLPCTVDYINRFRTTKQIK
ETLKNVKEGKVDILIGTHRITSKDVQFKDLGLMIIDEEQKFGVKTKEKLKEMRVNVDALT
LTATPIPRTLHFSLMGARDLSVIETPPPNRQPVTTKISTYSDEIIRDAVHNELMRGGQAF
FVHNRVADIEHFANNIMRLVPDARVTYAHGQMDGPTLEKIMLRFIQGEYDVLISTNIIES
GLDIPNANTIIVNQAHMFGLSDLHQMRGRVGRSNKKAYCYLLTPPTIGLSTDARKRLSTL
EEFSDLGDGFKVAMRDLDIRGAGDLLGGEQSGFINDLGFDTFNQILEEAVQEIKETQFAD
LFKEELANKTVKVNTVIETDFEILIPDTYVSSISERLNLYMRADKLKNEKELERYIKDIQ
DRFGTMPQPVKDLLETVKMRWVASKLGMEKLILKNEGLKAYLLEHTQAAYYQSEEFGKIL
MYVQTHPRNCQIKETKKRVIINIDGINSINDAMVLLEKLDQ
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgggagatttacaagacctgcgtcaaatagaattaaaagatttaatcaaagcttatcaa
tcggatagtactactggaattttactgaatcagttaaagaaaccggaaagtgcctcatat
ctaaaaggactttgcggaagtttagattccattattgcttctactgtttataataagcta
aaaggttgtcatgttttcgtgatgcacgatgtagaagaggccatgtatttcttaaacgac
cttcagaatcttctacccgatgcagatgtactttatttcccatcttcttacaaacgacct
tttgaatttacagaggtagaaaatgccaatgtgcttcaaagagcagaaacactcagcacc
ctcaacgaaaagaaaaacaagggagctttattggtgactcatccaccggcgttaaccgag
aaggtgatcaataaaaagtcgttggtagaaaatacctatgtcgctagagttggagaggat
atcgatcaaaactttattcgagaactattaattgaatatggttttgaacctacagatttt
gtttacgaagcaggtcagtttgctattcgtgggggtattattgatatctactcttttgcc
aacgagttacctttccgtatcgaattatttggtgatgaaattgaaagcatcagaactttc
gatccggtgactcaattatctcaagaagataaagaacatgccccaattgttccaaacgtc
cacaataaattgatgcaggaagtgagagaatcattacttgatttccttcctgatgccacg
gtttggatcaaggactatgaattgttggtagacaccctcgatcagttttttgataaggcc
actgcaaagtttgatgaaattctagaagtgagtggtggtactcaagtcatcaattctcca
gaagaattatttgaaacaagaaagggatttacaaagaaactatcatcgttacacagaatc
ctttttggaaatagaaagggcatcagaaatgcagaaaccatagcatttgatgccaaacct
cagcctagttttaataaaaacttccacttgttgagcgaaactttagaaaaacagcagtta
agtggaattagaaatataattgtctccgatttacccaaacaattagagcgtattcagacc
atattcgacgagatcaaacccgacctatttgtacaagaattaaacttaagtttaagaggt
gggttcatcgatcagcaaatgaatgtggcttgttttacagatcatcagatttttgaacgt
ttccatgcggccaagtcgaagaaaaagttctctaagtcaaaatcaatgacgcttaaagaa
ttgagagaattgaaagcgggagatttcgtggtacacatggatcacggtgtaggtcgtttt
gccggaatggagaagatcaaagctggagataaagaacaagaaagtatccgattggtctac
agggacaacgatttattgtacctaagtttgcatgccctccataagatatcaaagtattct
gggcaggaaggaagacagccgaccgttagtaaattaggatcacccgaatgggaaaataaa
aagaagcgtgcaaagaaaagagtcaaagacattgctgcagagttgatcagtctttatgca
aaacgtagagaatcgaaaggttatcagtttgaacaagatggctacctgcaagcagaattg
gaatcttctttcttatatgaagatactcccgatcaggcgaaagcgactcaagatgtgaaa
gaggatatggagaaaccgtatccaatggatcgtttggtttgtggtgatgtaggcttcggt
aaaacagaagtggctgttcgtgcagctttcaaagcagtctgcgatagtaagcaggtcgct
atattagtcccaacgacgatcttggcgatgcaacattataagactttcgtgcaaagaatg
ggcgacttgccttgtactgtagattatatcaatcgctttagaacaacaaaacagattaaa
gaaaccctcaaaaatgtaaaagagggaaaagtagatatattaataggtacgcatcgaatt
acaagtaaagacgttcagtttaaagacttgggattgatgattatcgatgaggagcagaag
tttggggtaaaaaccaaagagaagttgaaagagatgagagtaaacgtagatgctttaaca
cttacggctactcctattcctagaacattgcacttctccttaatgggagcgcgtgattta
tctgttattgaaactcctccacccaaccgtcagccggtcactacaaaaatctctacttat
agtgatgaaattattcgtgatgccgtacataatgaattgatgcgaggcggtcaagctttc
ttcgtgcacaacagagtggctgatattgaacatttcgctaataatatcatgcgattggtt
ccagatgcgagagtgacctatgctcacggacaaatggatggccccactttggagaaaatc
atgcttcgctttatacaaggtgaatatgatgtattgatatccactaatattatcgagtct
ggattagatattccaaatgccaataccattattgtaaatcaagcccatatgtttggttta
tcagatttgcatcaaatgagaggccgtgtaggtagatctaacaaaaaagcctactgttat
ttattaacccctcctactatcgggttatctacggatgctagaaaacgattatccactctt
gaagaattctccgatttaggtgatggatttaaggtcgctatgcgagatcttgatatccga
ggagcaggcgacttattgggtggtgagcaatcgggctttatcaatgatttaggttttgat
acatttaatcaaattcttgaagaagccgttcaggaaatcaaagagactcagtttgccgat
ttatttaaagaagaattggccaataaaacggtgaaagtaaatactgttatagaaactgat
ttcgaaatcctcattcctgatacctatgtcagcagtatatcagaaagactaaatttatat
atgcgtgcagacaaacttaaaaatgaaaaagaattagaaagatatataaaagatatccaa
gaccgatttggaacaatgcctcaaccggtaaaagatttattggaaacagtaaaaatgcgt
tgggtagcttctaaattgggaatggagaaattaattctcaaaaacgaagggttaaaagca
tatttattagagcatacacaagccgcttattatcaatcggaagagtttggaaaaatttta
atgtatgtacagacccatcctagaaattgtcagataaaagagacaaaaaagcgtgtaatc
atcaatattgatgggataaacagtataaatgacgcaatggttttattggaaaaattagat
caataa
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