Flammeovirga yaeyamensis: KMW28_17475
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Entry
KMW28_17475 CDS
T07356
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fya
Flammeovirga yaeyamensis
Brite
KEGG Orthology (KO) [BR:
fya00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fya03016
]
KMW28_17475
Enzymes [BR:
fya01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
KMW28_17475
Transfer RNA biogenesis [BR:
fya03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
KMW28_17475
Prokaryotic type
tRNA splicing ligases
KMW28_17475
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4197
Motif
Other DBs
NCBI-ProteinID:
QWG01435
UniProt:
A0AAX1N1K2
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All DBs
Position
1:4424474..4425877
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AA seq
467 aa
AA seq
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MGQQKLKGKHLRAIQYASNKAISLAVQIMAKHYKHTSMQDQLVLLEDIKNNYSKYLADEV
LSPIAKVFQPEINVKRQQVELLAEAKDFNVFGRKHISSNAYQQMRWAMKLPVVHSGAMMP
DAHQGYGLPIGGVLATNNVVIPYGVGVDIGCRMSLTIYPIQPNFLKRYEYQIKQALKEYT
NFGTGGELGIPQEHEILDRDTFSATSLLKQLHGRASRQLGTSGSGNHFVEFGTVTLPSEN
PFQLEAGEYVGLLAHSGSRGLGATIANHYTKIAKEKCLLPSPTQNLAWLDLNTQEGQEYW
LSMNLAGDYAKACHDQIHHHLAKALGIKAVAKVENHHNFAWKEMQADGTECIVHRKGATP
AGKGVLGIIPGSMTANGYIVQGKGENASLQSASHGAGRQFSRSKTKEKITGSQLKKILQK
EQVTLIGGSIDEAPIAYKNIEEVMSSQTHLVDVVGTFSPKIVRMDKA
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgggccaacagaaactgaagggtaaacaccttcgtgccattcaatatgcttcgaataag
gcaataagtcttgctgtgcaaataatggcgaagcattataaacatacctcaatgcaagat
cagttagtgttgcttgaggacatcaaaaataattattcaaaatacttagcggatgaggtg
ctatcgccgattgctaaagtatttcaaccagaaattaatgtaaaaagacagcaggtggaa
ctacttgctgaagccaaagattttaatgtattcggtcgaaaacatataagcagtaatgcc
taccaacaaatgcgttgggcaatgaaattacctgtagtacatagcggggcaatgatgccc
gatgcacaccaaggttatggattacccattggcggtgttttagcaacaaacaatgtagtt
attccttatggtgttggagtagacatcggttgccgaatgagtctaacaatttatccaatc
caacctaatttcttgaaacgctatgaatatcaaataaagcaagcgttgaaagaatatacc
aatttcggaacgggtggggaattaggtatccctcaggaacatgagattttagatcgtgat
accttctctgcaacttccttattaaagcaattacatgggagagcaagtagacaactaggt
acttcggggtctggaaatcactttgtagaatttggtactgtgacactcccatcagaaaat
ccattccaattggaagcaggtgaatatgtgggcttactagcccattcaggatcgagaggt
ttaggggcaacaatagcaaatcattatacaaaaattgccaaagaaaaatgtcttttgccc
tctcctactcaaaatttggcttggttggatttaaacactcaggaaggtcaggaatactgg
ctttcgatgaacttggcaggtgattatgcaaaggcttgtcatgatcagattcaccatcac
ttggccaaagctttaggaattaaagcagtggctaaggtggagaaccatcacaattttgct
tggaaagaaatgcaggcagatggtacagaatgcatagtgcatcgtaaaggggcgactcct
gcaggaaaaggtgttttgggaatcattcctggttcgatgacggcgaatgggtatatcgtt
caaggtaaaggtgaaaatgcttctcttcaatcggcatcacatggtgcaggacgacagttt
tctcgatctaaaaccaaggagaaaataacgggaagtcagttaaagaaaatccttcagaaa
gaacaagtcacccttattggaggaagtatagatgaagcacccatcgcttataaaaacatt
gaggaagtcatgagtagtcagactcaccttgtggatgtggtaggtaccttttctcctaaa
attgttcgaatggataaagcttaa
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