Flammeovirga yaeyamensis: KMW28_22905
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Entry
KMW28_22905 CDS
T07356
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fya
Flammeovirga yaeyamensis
Pathway
fya03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fya00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KMW28_22905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fya03019
]
KMW28_22905
Enzymes [BR:
fya01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KMW28_22905
Messenger RNA biogenesis [BR:
fya03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KMW28_22905
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
AAA_22
AAA_19
P-loop_SecA
Cas3-like_C_2
Utp25_C
Fe-ADH
DUF1848
Motif
Other DBs
NCBI-ProteinID:
QWG05273
UniProt:
A0AAX1NFX2
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All DBs
Position
2:704509..705873
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AA seq
454 aa
AA seq
DB search
MTFKELKLNPSILKALNEEKYIKPTPIQAKAIPFVLKREDVLGCAQTGTGKTAAFAIPIL
QLMQQDKKSKSSNKITALVLTPTRELAIQIEESFSTYGKYTDVQNTVIFGGVNQERQVRA
LRKGVDVLIATPGRLLDLIGQGFINLSDIKYFVLDEADRMLDMGFIHDIKKVLKLLPKKR
QSLFFSATMPKNIVSLSKQILINPKSVTVTPVSSTAETIQQFVYYTNKKEKIDLLHHLIK
EKKIQQVLVFTRTKYGADGIVRKLTKKGTKCAAIHGNKSQNQRQKALAAFKDGSINVLVA
TDIAARGIDIDKLQYVINYDIPNESETYVHRIGRCGRAGEKGISISLSEAEDNKYIKDVE
KLTKQTLTVVEEHPYPQTDKPMNATQKKAMEKEKQKRKQEFFANKKRKAAGNAKKEGEKK
KPSRNRNTGKPKTTTSNKKGGFKGKFKSNRRKSN
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgacattcaaagagctgaagttaaatccttctatcctcaaagcattaaacgaagaaaag
tacattaaaccgacaccgattcaggcgaaagctattccttttgtattaaaaagagaagat
gtattgggttgtgcacaaacaggaactggaaaaacagcagcctttgcgattccgatttta
caattaatgcagcaggataaaaagtcgaaatcatccaacaagattacggcattggtgttg
actccaacaagagaattggccattcagatagaagaaagtttctctacttatgggaaatat
acggatgtacaaaatacagtcatttttggtggggttaatcaagaacgacaagtacgtgca
ttaagaaaaggagtggatgttttaattgcaactcctggacgattgttagatttgattggg
caaggttttatcaacttatcggatatcaaatactttgtcttggatgaggccgatcgtatg
ttggatatgggtttcattcacgacatcaagaaagttttaaaacttttacctaaaaagaga
caatccttattcttctcagcgacaatgcctaagaatattgtttccttatcgaaacagatt
cttatcaaccctaaaagtgtgacggtaactcctgtatcttcaacagcagagaccattcaa
cagtttgtgtattataccaataagaaagagaaaatcgacttgttgcatcacctcatcaaa
gagaagaaaatacaacaggtattggtgtttacaagaactaaatatggtgcagacggtatc
gttaggaagttgacaaaaaaggggacaaagtgtgctgctatccacggaaataaatctcag
aaccaaagacaaaaggcgttagctgcttttaaagatggaagcattaatgtgttggtcgca
acggatattgcagctagaggaatcgatatagataaactacaatacgttatcaattatgat
attccgaatgagtcggaaacttatgtacaccgaatcggccgttgcggtagagcaggtgag
aaaggtatttcgatttcactaagtgaagcggaagataataagtacatcaaagatgtagaa
aaactaacgaagcaaacccttactgtggtagaggaacatccttatcctcaaacggacaaa
ccgatgaacgccactcagaaaaaggcgatggaaaaggaaaagcagaaaagaaaacaagag
ttttttgctaataaaaagcgtaaagctgctgggaatgctaaaaaggaaggtgagaaaaag
aagccttcgagaaatagaaatacgggtaaacctaaaaccactacatcaaataaaaaaggt
ggttttaaaggaaaatttaagtccaatagaagaaaaagcaattaa
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