Flammeovirga yaeyamensis: KMW28_27440
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Entry
KMW28_27440 CDS
T07356
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
fya
Flammeovirga yaeyamensis
Brite
KEGG Orthology (KO) [BR:
fya00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fya03019
]
KMW28_27440 (hrpB)
Enzymes [BR:
fya01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KMW28_27440 (hrpB)
Messenger RNA biogenesis [BR:
fya03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KMW28_27440 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
CON_HrpB
ResIII
AAA_19
HA2_C
AlkA_N
nSTAND3
AAA_22
AAA_11
AAA_30
Helicase_RecD
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QWG04636
UniProt:
A0AAX1NAT2
LinkDB
All DBs
Position
2:1911545..1914028
Genome browser
AA seq
827 aa
AA seq
DB search
MAFPYHQTNLPVKDIIPEVHQVLENQNTLILKAPPGAGKSTLLPLALLGQKWLGDQKILM
LEPRRLAAKSIAERMSDMLGEKVGNTVGYRVRFDTKISDKTKIEVVTEGILTRMIHHDNT
LEDVGIIIFDEFHERSIHADVAMALSREIQKVIREDLRILVMSATMDMPQLSLMLDQAPI
IESKGKMYPVDINYVGDIDRYLIPELTAKTVIDAAKKHDGDILCFLPGQGEIRKCEEILR
GALREFSIHPLYGQLPFHVQQKAIFPHPQGKRKVVLATNIAETSLTIEGVKIVVDSGFTR
TQVFDANSGLSKLTTEQISEDAADQRSGRAGRLSEGVCYRLWSLSTHQKLDKERTPEIEK
ADLTSLALDMAEWGITSPTSLEWVTPPPNGHFLQAMDTLEQLEAFEDGLLTDHGKEIHKL
PCHPRIAHMLLYAEEEDLLALACDLAAILEERDPLPNNSGIDINLRIEALRRFRTDSGKN
KRFRNIEKVANQYRRLFDIDADNSGVDDFETGVLLAHAYPERIACSKPGNNAQFQLANGK
IAMAGHKDDLAYEQWLAVAHIDAREGMGKIFMASPLDPKDLATMVKEKEMIEWDTDDGGL
IATKDLRIGSIVLKSTPIQSISEEAKLNAITDAIKKEGRQLLDFNEEVTQWQARIASLRK
WNPKEEWPDCSTPHLLLNNKQWITPYLKDVKKPQDLKKLKLIDILHHSLEWDKQEALNTL
APIKIKVPSGSQIKLKYSDNGAPPILAVRLQECFGLAETPSVNNCKQNVLMHLLSPGFKP
VQITSDLKSFWDNTYFEVKKELKRRYPKHAWPEKPWEEEAVRGVKRK
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
gtggcatttccatatcatcaaaccaatcttccggtaaaagatattatacctgaagttcat
caagttttagaaaatcaaaatacgcttattttaaaagcacctccgggcgcaggtaaaagt
actttattgccccttgctttattgggacaaaagtggctcggagatcagaaaatcttaatg
cttgaaccaagacgtttagcagcaaaatcaattgctgaaagaatgtctgacatgttgggt
gaaaaagttggaaatacggttggctatagagtccgattcgatactaaaatatctgataag
acaaagatagaagtggttactgagggtattctgactagaatgattcatcatgacaacact
ttagaagatgttggaatcattatttttgatgaattccatgaacgcagtattcatgctgat
gtagccatggcgctttctagagaaatacagaaggtgattagagaagatctaaggattttg
gtcatgtcagccacaatggatatgccacaattgtcactaatgctcgatcaggctccgata
atagaaagtaaaggaaaaatgtatcctgtagacattaactatgttggtgatattgatcgt
tatctcatccctgaacttactgcaaaaacggttattgatgcagcaaaaaaacatgatgga
gatattctttgttttttacctggccaaggcgaaatcagaaaatgtgaggagatcttaagg
ggtgcacttcgtgagttttctattcacccgctttatggtcaattaccatttcatgttcag
caaaaggcaatttttccacatcctcaagggaaaagaaaagtagttttggctactaacatt
gcagaaaccagtttaaccatcgaaggagtgaaaattgtagtcgattctggctttacaaga
actcaagtttttgatgccaactcagggctttcaaaattaactactgaacaaatttctgaa
gatgccgcagatcaaagaagtggtcgtgctggacgtctttcagagggtgtttgttatcga
ctttggagcttatctactcatcaaaagttagataaagaacgtactcctgaaatagaaaaa
gctgatttaacatcactggccttagatatggcggaatggggcattacttcacctacttca
ttagaatgggttactcctcctccaaacggtcattttctacaagccatggacaccttggaa
caattagaggcttttgaagatggactattaaccgatcatggtaaggagatacacaaatta
ccttgtcacccaaggattgcgcatatgttattgtatgctgaagaggaagatcttcttgct
ttagcttgtgatttagcagctattttagaagaaagagatcctcttcctaataactctgga
attgacattaatttgagaatagaagccttaagacgatttagaactgatagcggaaagaac
aaacgctttaggaatatagaaaaagtagccaatcaataccgcaggctatttgatattgat
gctgacaactcaggtgtggatgattttgaaacaggtgttttattggctcatgcctaccca
gaaagaattgcttgttctaaacctggaaataatgcacaattccaacttgcgaatggtaaa
attgccatggcgggtcataaagacgatttagcctacgagcaatggttggcagtggcacat
attgacgcccgtgagggtatgggaaaaatctttatggcatctcctttagatccaaaggat
ttagccactatggttaaagaaaaagaaatgatcgaatgggatactgatgatggaggactt
attgccacaaaagacttacgcattggtagcatagtgcttaaaagtacgcctatccaatcc
atttctgaggaagccaaattaaatgcaattactgatgccataaaaaaagaaggccgtcag
cttctagatttcaatgaggaagtcactcaatggcaagccaggattgctagtttaagaaaa
tggaatcctaaagaggagtggcccgactgttctaccccacacctattgttaaacaacaaa
caatggatcaccccttacttaaaagacgtaaaaaaacctcaagatttaaagaaattaaag
ctgattgatattctacatcatagtttagagtgggataaacaagaagcattaaatacactt
gctccaataaaaataaaagtcccaagtggtagtcagataaaacttaaatattctgataat
ggagcacctcctattttggccgtacgcttacaagaatgttttggtttagcagaaacacct
tctgtaaacaactgtaaacaaaatgttttgatgcatttattgtctccagggtttaaaccg
gtacagattacatctgacttaaaaagcttctgggacaacacctattttgaggtaaaaaag
gaactgaaaagaagatatcctaagcatgcgtggccagaaaaaccatgggaagaagaagcc
gtaagaggagttaaaagaaaataa
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