Flammeovirga yaeyamensis: KMW28_28170
Help
Entry
KMW28_28170 CDS
T07356
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
fya
Flammeovirga yaeyamensis
Pathway
fya03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fya00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
KMW28_28170 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fya03400
]
KMW28_28170 (sbcB)
Enzymes [BR:
fya01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
KMW28_28170 (sbcB)
DNA repair and recombination proteins [BR:
fya03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
KMW28_28170 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KMW28_28170 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KMW28_28170 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_C
ExoI_SH3
RNase_T
WHD_SSO1393
HTH_68
Motif
Other DBs
NCBI-ProteinID:
QWG04775
UniProt:
A0AAX1NE64
LinkDB
All DBs
Position
2:complement(2148046..2149500)
Genome browser
AA seq
484 aa
AA seq
DB search
MNPTSLFFYDYETFGRDPRQDKIAQFAGVRTDLDLNIIEEPIIKFCQPSLDFLPEPEACL
ITGITPQIANNNGIPEYQFMRIIKNELGRKGTCHVGYNNISFDDEFSRFGFYKNFIDPYS
HEWADNNSRMDALEILRLTYALRPEGINWPTNDEGKQSFKLEHLSVANGIEHENAHDAMS
DVYATIEVLKLVKQHQPRLFDFALKMRNKKVAKDEIEKAMNSGGYLLKISPYVPVENGHL
SFVFPICQDAQNTNAFLGYDLRTSPTCLKDLDVAQLQEKMFKKKDDMEEGEERPGVVQCI
VNKSHIYCDLRTLSPKRAEELGIDLKTIEAHKNQLIELLSDSTIEKKLKEVFNREFAPIT
DVDGQLYDQFINNFDRSIANRLTTVDNPELINHQNFKFRDERLIELLYRYKGRNFYNQLP
DNEKEVFKSFCRSKVISESNNTMGIDKYRDNLSELMGEYKDDPRALGILTALKQYTDQVE
KKLN
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgaatccaacttcattattcttttacgattacgagacgttcggcagggatccgaggcaa
gataaaattgctcaatttgctggggtaagaaccgatctagatttgaatattattgaagag
ccaattatcaaattttgtcagccttctttagactttctacctgagcctgaggcatgtctg
attactgggattaccccacagatcgccaataataatggtattcccgaatatcaatttatg
cgcatcattaaaaatgagttaggaagaaaaggaacatgtcatgtggggtacaataatatt
agcttcgacgacgagttttctcgttttggcttttacaagaatttcatagatccttattct
catgagtgggcagacaataattcaagaatggatgcactggaaattcttcgtcttacctac
gcattacgacctgaaggaatcaattggccaacaaatgatgaaggaaagcaatcttttaaa
ttagaacacttatcagtagctaacggaattgaacatgaaaacgcacacgatgccatgtct
gatgtgtacgctactatagaggtacttaagttggtaaaacagcatcaaccccgattattt
gattttgctttaaagatgagaaataaaaaagtggccaaagatgaaatcgaaaaggcgatg
aattcgggaggttatcttttgaaaatttcaccatatgtacctgtggaaaatggtcactta
tcatttgtctttccaatttgtcaggatgctcaaaacacgaatgccttcttaggatacgat
ttgcgtacatcacctacttgccttaaagatttggatgttgcacagcttcaagaaaagatg
ttcaagaaaaaagacgatatggaagaaggggaggagagacctggtgttgtacagtgcatt
gttaataaatcgcatatttactgtgatctaagaacgctttctcctaaaagagcggaagaa
ttgggtatcgatttaaaaacgattgaagctcataaaaatcagttgatcgaattgttatca
gatagcacgattgaaaagaaattaaaagaagtgtttaatagagagtttgctccaatcaca
gatgtcgatggacaattatacgatcagtttatcaataatttcgatcgatcaattgctaat
cgattaactacagttgataatcctgaactcatcaatcatcagaattttaagtttagagac
gaacgtcttattgaacttttgtatagatataaaggtagaaatttctataatcaactacct
gataacgaaaaagaagtattcaagtctttttgtagatctaaagtgatttcggaaagtaat
aatacgatgggtatagataagtatagagataacttatcagaattaatgggcgaatataaa
gacgatccacgagctctaggtattcttaccgctctaaagcaatacactgaccaagtagaa
aaaaaattaaactaa
DBGET
integrated database retrieval system
