Fuscovulum ytuae: QF092_00740
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Entry
QF092_00740 CDS
T09905
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fyt
Fuscovulum ytuae
Pathway
fyt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fyt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QF092_00740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fyt03019
]
QF092_00740
Enzymes [BR:
fyt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QF092_00740
Messenger RNA biogenesis [BR:
fyt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QF092_00740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
AAA_22
DEDD_Tnp_IS110
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
WGV16372
UniProt:
A0ABY8Q6T0
LinkDB
All DBs
Position
complement(155284..156678)
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AA seq
464 aa
AA seq
DB search
MTTFADLGLSPKLLKALEKTTLKDPTPIQVQAIPHVMKGRDLMGLAQTGTGKTAAFGLPL
LHRLLDIGHPPGPRNVRALILAPTRELVTQISDNLTIFTKGTPVKVLTVVGGASLNRQAM
ALARGADVLVATPGRLIDLLERGDVSLQATGYLVLDEADHMLDMGFIHALRKIAKHIPLK
RQTLLFSATMPKDIEEIAGTYLRDPVRVQVAPPGKPAEKIVQGVHFIPNGDKAKLLEDYL
KKHPGEQALVFGRTKHGSEKLSKLLAQWGFKVGSIHGNKSQNQRDRTLTEFRNGELDVLV
ATDVAARGIDIPGVRHVYNYDLPNVPENYVHRIGRTARAGAEGNAVAFCAPAEMGELQAI
EKVLKKQIPVIGGAPWAADVVAAAPKPGQNRGQRQGQNRGQNQGPRPGKPGGAKPQSRPE
HASQAPKPQPRTGAKPARPMGGGQSPTRPGGTGKPRRQGNRRPA
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccttcgccgatctcggcctttcgcccaagcttctgaaagcgcttgaaaaaacc
actcttaaagacccgacgcctattcaggtgcaggccatcccccatgtgatgaagggccgc
gatctgatgggtcttgcccagaccggcacgggcaagacggcggccttcggcctgccgttg
ctgcaccgcctgctggacatcggccatccgccgggaccgcgcaacgtgcgcgccctgatc
cttgcgccgacgcgggaactcgtcacgcaaatctctgataaccttacgattttcaccaag
ggcacgcctgtcaaagtgctcacggtcgtgggtggcgcctcgctcaaccgtcaggccatg
gcgctggcgcggggggcggatgtgctggttgccacccccggccgtctgatcgatctcttg
gaacgcggcgatgtctcgcttcaggccacgggttacctcgtgctggatgaggcggaccat
atgctcgacatgggttttatccatgcgctgcgcaaaatcgccaagcacatccccctgaaa
agacagacacttctcttctcggccacgatgcccaaggatatcgaggagatcgccggaacc
tatctgcgcgacccggtccgcgtgcaggtggcccccccgggcaagcccgccgaaaagatc
gtgcagggcgtgcatttcatccccaatggcgacaaggccaagctgctcgaagactatctg
aagaaacacccgggcgagcaggcgcttgttttcggccggaccaagcacggttcagagaaa
cttagcaaattgctggcacaatggggattcaaggtcggctcgattcacggcaacaaaagc
cagaaccagcgcgaccgcaccttgacagagtttcgcaatggcgaactcgatgtccttgtg
gcgacggatgtcgcagcgcgcgggatcgatattcccggcgtgcggcatgtctataactat
gatctgcccaatgtgccggaaaactatgtccaccgcatcggccgcacggcccgcgcgggg
gccgaaggcaacgccgttgccttctgcgccccggccgagatgggggaacttcaagccatt
gaaaaggttctgaaaaaacagattccggtgattggcggcgcgccttgggccgccgatgtc
gtcgccgctgcgcccaagcccggccaaaaccgcgggcaaaggcagggccaaaaccgtggc
cagaaccaaggcccgcgccccggcaagcccggcggcgccaaaccgcaatcccgccccgaa
cacgcctcgcaggcccccaagccgcaaccccgaaccggcgcgaaacctgcccgcccgatg
ggcggcggccaatcccccacccgccccggcggcacgggcaaaccccgccgccaaggcaac
cgtcgccccgcctga
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