Fuscovulum ytuae: QF092_15590
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Entry
QF092_15590 CDS
T09905
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fyt
Fuscovulum ytuae
Pathway
fyt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fyt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QF092_15590 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fyt03021
]
QF092_15590 (rpoC)
03400 DNA repair and recombination proteins [BR:
fyt03400
]
QF092_15590 (rpoC)
Enzymes [BR:
fyt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QF092_15590 (rpoC)
Transcription machinery [BR:
fyt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QF092_15590 (rpoC)
DNA repair and recombination proteins [BR:
fyt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QF092_15590 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
LisH_PAC1
DUF7567
Motif
Other DBs
NCBI-ProteinID:
WGV15662
LinkDB
All DBs
Position
3240213..3244451
Genome browser
AA seq
1412 aa
AA seq
DB search
MNQELTNNPFNPVAPIKTFDEIKISLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERILYFENYVVIEPGLTDLTYGQLLTEEEFLDAQDQYGADAFT
ANIGAEAIREMLAAIDLEQTADTLREELKEATGELKPKKIIKRLKIVESFLESGNRPEWM
VLTVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQEAVDALFDNGRRGRVITGTNKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMVLGLYYVTMERKGMVGEGKIFADIDEVEHAL
AAGEVHLHASITARLRQIDEEGNEVWKRYKTTPGRLRLGNLLPLNAKAPFELVNRLLRKK
DVQAVIDTVYRYCGQKESVIFCDQIMGLGFREAFKAGISFGKDDMLIPETKWSIVNEVRD
QVKEFEQQYMDGLITQGEKYNKVVDAWSKCSDKVAAEMMAEISAVRFDDAGAEKEPNSVY
MMSHSGARGSPAQMKQLGGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVRVHDCGTERAITAETAVNDGEVVQSLAERVLGRV
AADDILVPGGDEVIVARGEVIDERKADAIDAAGVQVARIRSPLTCEAEEGVCAMCYGRDL
ARGTLVNIGEAVGIIAAQSIGEPGTQLTMRTFHIGGIAQGGQQSFLEASQEGKIEFRNGN
LLTNANGEQIVIGRNMSIAIIDEAGAERAVHKVGYGAKVHAKDGQAVKRGTKLFEWDPYT
LPIIAEKGGVAKFVDLVSGLAVREETDEATGMTQKIVSDWRSAPKGNDLKPEIIIMDPAT
GEPVRADNGNPITYPMSVDAILSVEDQQEVRPGDVVARIPREGAKTKDITGGLPRVAELF
EARRPKDHAIIAETDGYVRFGKDYKSKRRITVEPVDETLTPVEYMIPKGKHIPVQEGDFV
QKGDYIMDGNPAPHDILRIMGVEALANYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKL
EILDSGDTTLLKGEQVERIELEEENAKARARGLREAKAEPVLLGITKASLQTRSFISAAS
FQETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATSRVKKIASDRDQNVIDARR
SEAETAAALAAPMDVVDLGEMESGLADFDSRD
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgaccaacaacccgttcaacccggttgccccgatcaagacgtttgac
gagatcaagatctcgctcgcgtcgccggagcgcatcctttcgtggtcctatggcgagatc
aagaagccggagaccatcaactatcggaccttcaagcccgagcgtgacgggctgttctgc
gcccgtatctttgggccgatcaaggattacgaatgcctttgcggcaagtacaagcgcatg
aagtatcgcggcgtcgtctgcgagaaatgcggtgtggaagtgacgctgcagaaggtgcgg
cgcgagcggatgggccatatcgaactggccgcgcccgtcgcgcatatctggttcctcaaa
tcgttgcccagccgtatcggtttgatgctggacatgacgctgcgggatctggagcgtatc
ctttactttgaaaactatgtcgtcatcgaacctggtctgacggacctgacctatggtcag
ttgctgaccgaggaagagttccttgatgcgcaggatcagtatggcgcggatgccttcacg
gccaatatcggggccgaggcgatccgcgagatgctggcggcgatcgatctggaacagact
gccgacacgctgcgcgaagagttgaaggaagcgaccggcgagctgaagccgaagaagatc
atcaagcggctgaagatcgtcgagagcttccttgaatcgggcaaccgcccggagtggatg
gttctgaccgtgctgccggtgatcccgccggaactgcgcccgctggtgccgctggacggg
ggtcgttttgcgacgtcagacttgaacgacctgtatcgccgggtcatcaaccggaacaac
cgtctgaagcgcctgatcgaactgcgtgcgcccgatatcatcgtgcgcaacgaaaagcgg
atgctgcaagaagcggtggatgcgctgttcgacaatggccgtcggggccgggtgatcacg
ggcacgaacaagcgcccgctgaaatcgctgtccgacatgctgaagggcaagcagggccgg
ttccgccagaacctgctgggcaagcgcgtggacttttcgggccgttcggtcatcgtgacc
gggccggaactgaagctgcaccagtgtggtttgccgaagaagatggcgttggagctgttc
aagccgttcatctattcgcggcttgaggcgaagggcctgtcttcgaccgtcaagcaggcc
aagaaactggtcgagaaagagcgtccggaggtttgggacatcctcgacgaggtgatccgc
gaacatcccgtcctgctgaaccgtgcgccgacgctgcaccgtctggggattcaggcgttc
gaaccgatcctgatcgaaggcaaggcgatccagctgcatccgctggtctgttcggccttc
aacgccgactttgacggcgaccagatggccgtgcacgtgccgctttcgttggaagcgcag
ctggaagcgcgcgttctgatgatgtcgacgaacaacgtgctgtcgcctgcgaacggcgcg
ccgatcatcgtgccgtcgcaggacatggttctgggtctttactacgtgaccatggaacgc
aagggcatggtcggcgaaggcaagatctttgccgatatcgacgaggtcgagcatgcgctg
gcggcgggcgaggtgcatcttcacgcgtcgatcacagcgcgcctgcgccaaatcgacgaa
gagggcaatgaggtctggaagcgctacaagacgacccccggtcgtctgcgtctgggcaac
ctgctgccgttgaacgccaaggcaccgttcgaactggtgaaccgtctgttgcgtaagaag
gatgtgcaggccgtcatcgataccgtctaccgctattgcgggcagaaggaatcggtcatt
ttctgcgaccagatcatgggtctgggcttccgcgaggcgttcaaggcgggcatttcgttc
ggcaaggacgacatgcttattcccgaaaccaagtggagcatcgtgaacgaggttcgcgat
caggtgaaggaattcgaacagcagtatatggacggcctgatcacccaaggtgagaagtac
aacaaggttgtcgatgcttggtcgaagtgttccgacaaggtggcggcggaaatgatggcc
gaaatctcggctgtccgctttgacgatgcgggggcggagaaggagccgaactcggtctat
atgatgtcgcactctggtgcgcggggttcgcctgcgcagatgaagcagcttggcgggatg
cgcggccttatggccaagccgtcgggcgagatcatcgagacgccgatcatctcgaacttc
aaggaaggtctgaccgttcttgaatacttcaactcgacccacggggcgcggaaaggtctg
gccgatacggcgctgaagaccgcgaactcgggctatctgacgcggcgtctggtggacgtg
gcgcaggattgcatcgtgcgcgtgcatgattgcggaacggagcgggcgatcacggcagaa
acggctgtgaacgacggtgaagtagtgcaatcgctggccgagcgtgtgctgggtcgtgtg
gcggcggatgatatcctcgtgcccggcggcgacgaggtgatcgtggcgcgcggcgaggtg
atcgacgagcgcaaggccgatgccatcgatgcggcgggcgtgcaggttgcacgtatccgc
agcccgctgacctgcgaggcggaagagggcgtttgcgccatgtgctatggccgtgacctt
gcccgtggcacgctggtgaatatcggcgaagcggtggggatcatcgccgcgcagtcgatc
ggggaacccggcacgcagctgacgatgcggaccttccacatcggcggcatcgcgcagggt
gggcagcagtccttccttgaggccagccaagagggcaagatcgagttccgcaacggcaac
cttctgaccaacgccaatggcgagcagatcgtgatcgggcggaacatgtcgatcgccatc
atcgacgaggcgggggcggagcgtgcggtccacaaggtgggctatggcgcgaaggtccat
gccaaggacggtcaggccgtgaagcgcggcaccaagctgttcgaatgggacccctatacg
ctgccgatcatcgccgaaaagggcggtgtggcgaaattcgtcgaccttgtttccggtctt
gcggtgcgggaagagacggacgaagccacgggcatgacgcagaagatcgtgtcggattgg
cggtcggcgcccaagggcaacgacctgaagcccgagatcatcatcatggacccagcgacg
ggggaaccggtgcgtgccgacaatggcaacccgatcacctatccgatgtcggtggacgcg
atcctgtcggtcgaagatcagcaggaagtgcggccgggcgatgtggtggcacgtatcccg
cgcgaaggggccaagaccaaggacatcaccgggggtcttccccgcgtggcggaactgttc
gaagcacgtcgtccgaaggaccatgcgatcatcgcggaaaccgatggctatgtgcggttc
ggcaaggactacaagtccaagcgccgcatcacggtggaaccggtggacgagacgttgacg
ccggtcgaatacatgatcccgaagggcaagcacatccctgtgcaggaaggcgacttcgtg
cagaagggggattacatcatggacggcaaccccgcgccgcatgacatcctgcgcatcatg
ggtgtcgaggcgctggccaactacatgatcgacgaagtgcaggacgtgtatcggctgcag
ggcgtgaagatcaacgacaagcatatcgaagtgattgtccgtcagatgctgcaaaagctg
gaaatcctcgacagcggcgataccacgctgctgaagggtgaacaggtggagcgtatcgaa
ctggaagaggagaacgccaaggcgcgggcccgtgggctgcgtgaggcgaaggccgagccg
gttctgctgggcatcaccaaagcgtcgttgcagacccgcagcttcatctcggccgcgtcc
ttccaggaaaccacgcgggtgctgaccgaggcttcggttcagggcaagcgcgacaagctg
gttggtctgaaagagaacgtcatcgtgggccgtctgatcccggcagggacgggtggcgcg
acgagccgcgtgaagaagatcgcgtcggatcgggaccagaatgtcatcgatgcccgccgg
tcggaggccgaaacggccgccgctttggccgcgccgatggatgtggtcgatctgggcgag
atggagtcgggtctggcggatttcgacagccgcgattga
DBGET
integrated database retrieval system
