Galbibacter sp. BG1: HX109_05880
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Entry
HX109_05880 CDS
T06675
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
gaa
Galbibacter sp. BG1
Pathway
gaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HX109_05880 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaa03019
]
HX109_05880 (rnr)
03016 Transfer RNA biogenesis [BR:
gaa03016
]
HX109_05880 (rnr)
Enzymes [BR:
gaa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HX109_05880 (rnr)
Messenger RNA biogenesis [BR:
gaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HX109_05880 (rnr)
Transfer RNA biogenesis [BR:
gaa03016
]
Prokaryotic type
tRNA degradation factors
HX109_05880 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_HELZ2
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QLE01116
LinkDB
All DBs
Position
1335750..1337933
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AA seq
727 aa
AA seq
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MTKRKKRAQKQQKNEITKGIFTVLESNREQSFNYKQIAAKLDIKDTSGRNLLIKRLGQLK
EKKRIEEVERGKYKAIPSQNYYEGVVDMTGRNNAYVVCEDLDSDVFVPFNLLNKALHGDV
VEVYVFPRRRSGKKLEGEITKIIERKKTTFVGIVQMQKNFAFVNPTDFKMYTDIFVPKNK
IGDAEHGEKVIVEIQDWPKNADSPYGKIVQVLGKPGEHDTEIHAILAEYGLPYNFPEEVE
HYANKLDTSITKEEIAKRRDMRDVPTFTIDPKDAKDFDDALSFRILEDGNYEVGIHIADV
SHYVTPDTILEEEAYNRATSVYLVDRVVPMLPEILSNNACSLRPNEEKYTFSAVFKMNKD
AQVLDKWFGRTVTYSDRRFAYEEAQAIIENQNNKVPVEVSLTGEDYEVEEHIADAIITLD
KMAKLMRSRRLAAGAISFDKVEVKFELNDKSEPVGVYFKTAKDANKLIEEFMLLANRKVA
EFIGKQKKTFVYRVHDEPDDEKLMLLQGVISKFGYGINMKSKKTISSSLNSLLEEVQGTK
EQNLVDTLTIRTMSKAIYTTDNIGHYGLGFDFYTHFTSPIRRYPDVMVHRLLQHYLDGGA
SVNEEKYEEKCKHSSSMEYLATSAERDSIKYMQIKFMEGRYDEEFLGVISGVTEWGIYVE
LVDNKCEGMIRTRDIKDDYYVFDEKQYALVGEVTKNTYQLGDEVFVKLKSTDLVKRHLDF
ELTGKKQ
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaaagaaaaaaaagagcccagaaacaacagaaaaatgaaattaccaaagggatc
tttacagtattggaaagtaatagagaacagagttttaactataagcaaatagcagcaaaa
ctcgacataaaagatacaagtggtagaaatttattgatcaaaagacttggtcaacttaaa
gaaaagaagagaatagaagaagtagaaagaggaaagtataaagccataccatcgcaaaat
tattatgagggagtggtagacatgaccggtagaaataatgcttacgtggtttgcgaagac
ctggatagcgatgtgtttgttccgttcaatcttttaaataaagcgctgcacggcgatgtg
gtggaggtatatgttttccctagaaggcgcagcggtaaaaagctcgaaggggaaattacc
aagattatagagcgtaagaaaaccacatttgtgggaatagtacaaatgcaaaagaatttt
gcttttgtaaatcctacagattttaaaatgtataccgatatttttgttcctaagaacaag
attggggatgcagagcacggggaaaaagtaatcgtggaaattcaagattggcctaaaaat
gccgattccccttatggaaaaatagttcaggttttaggaaaaccaggagaacacgatacc
gaaattcacgccattttagccgaatatggattgccttacaactttccagaggaagtagaa
cactacgccaataaattggatacttccataacaaaagaagaaattgccaaacgtagggac
atgagagatgttcccacttttacaatagatcccaaagatgctaaagactttgatgatgct
ttgtcgtttagaattttagaagatggaaattacgaagtgggaattcatattgcagacgtt
tcccattatgtaaccccagatactattttagaggaagaagcttataacagggctacttct
gtgtatttggtagatagggtagtacctatgttaccagaaattctctccaacaatgcatgt
tccttaagacccaacgaagaaaaatatacgttttctgcagtttttaagatgaacaaagat
gcgcaggttttagataaatggtttgggcgcacggttacttattccgataggcgttttgct
tatgaagaagcacaagctataatagaaaaccaaaataacaaagtaccggtagaggtttcc
cttactggggaagattatgaggtagaagaacatattgccgatgctataattactttggat
aaaatggctaaattgatgcggagcagacgcttggctgctggggctatttcttttgataaa
gtggaagtgaagttcgaactgaatgataaaagcgaaccggtaggagtttattttaaaacg
gctaaagacgccaataaacttattgaagagtttatgttattggccaacagaaaagtagcc
gaattcataggaaaacaaaagaaaacttttgtataccgtgttcacgatgagccagacgat
gaaaaattaatgctgctacaaggtgttatttccaagtttggttatggtattaatatgaag
agcaaaaagaccatttccagctctttaaatagcttattggaggaagtacaaggtaccaaa
gaacagaatttggtagatacgcttacaattagaaccatgagcaaggctatttatactact
gataatattggacattacggacttggatttgatttttatacccattttacatcgcctatt
agaagatatccagatgttatggtacatagattgctacagcattatttagatggtggggcc
tcggtaaatgaagagaagtatgaggagaaatgcaagcattcctctagcatggaatatttg
gccactagcgccgaaagggattctataaaatacatgcagattaaatttatggaagggcgc
tacgacgaagaattcttgggtgttatttctggagtgaccgaatggggaatttatgtagag
ttggtggataataaatgtgaaggtatgattcgaacccgggatattaaagacgattactac
gtttttgatgaaaaacaatatgccctggttggcgaagttaccaaaaacacttatcaactt
ggagatgaagtttttgtaaaacttaaaagtaccgacttggtaaaaagacacttagatttt
gaacttactgggaaaaagcagtaa
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