Galbibacter sp. BG1: HX109_08200
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Entry
HX109_08200 CDS
T06675
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
gaa
Galbibacter sp. BG1
Pathway
gaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HX109_08200 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gaa03021
]
HX109_08200 (rho)
03019 Messenger RNA biogenesis [BR:
gaa03019
]
HX109_08200 (rho)
Transcription machinery [BR:
gaa03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HX109_08200 (rho)
Messenger RNA biogenesis [BR:
gaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HX109_08200 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
QLE01547
LinkDB
All DBs
Position
1855747..1857450
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AA seq
567 aa
AA seq
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MFEISDLKAKKLAELHEIAKVAGIPKYKSLKKNDLIYQILDVQAASPEAVAKEKAKAEKD
NAGEKKSAPKPTPRKRTRTTKKPTNNQPSDSKNTPQKTSENTKPEAKKEEVAPAKQAPKQ
ENNAPKKEESKKTQNNNRNTNDSKNTKQRKDSNSNNSNASRNQNQPQQHKKNNNAPKDRD
NYDKEKKNRYREPDFEFDGIVESEGVLDIMQDGYGFLRSSDYNYLSSPDDIYVSQSQIRL
FGLKTGDTVKGTVRPPKEGEKYFPLIKVNQINGLDPQVVRDRVSFEHLTPLFPNEKFRLA
EKQSTMSTRIVDLFSPIGKGQRGMIVSQPKTGKTMLLKDIANAIAANHPEVFQLILLIDE
RPEEVTDMQRHVRGEVIASTFDEPADRHVKVANIVLEKAKRLVECGHDVVVLLDSITRLA
RAYNTVQPASGKVLSGGVDANALHKPKRFFGAARNIEGGGSLTIIATALTDTGSKMDEVI
FEEFKGTGNMELQLDRRISNKRIFPAIDLISSSTRRDDLLLDENSIQRMWIMRKYLSDMN
PIEAMEFMEQRIKMTKNNEEFLMTMNQ
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaatttcagatttaaaagcaaaaaaacttgctgagttacatgagattgccaaa
gtggcgggtattcctaaatacaaatctctcaaaaagaacgatttaatatatcagatatta
gatgtacaggctgcgagtccagaggcggtagcaaaagaaaaggcaaaagcggagaaagat
aatgcaggcgagaagaagagcgctcctaagcctaccccgagaaaaagaacacgtactacc
aaaaaacctaccaataaccaaccttccgattctaaaaacactcctcaaaaaacttcagaa
aatactaagccagaagctaagaaagaggaagtggctcctgctaagcaggcaccaaagcag
gaaaataatgctcctaaaaaggaagagtcgaaaaaaacacaaaataataatagaaacacc
aacgattctaaaaatacaaaacagcgcaaggatagcaatagcaacaacagcaacgcttcg
cgcaaccaaaaccaaccgcaacagcacaagaaaaacaacaatgctcccaaagacagggat
aattacgataaggaaaagaaaaaccgttaccgtgagcccgattttgagtttgatggtatt
gtagaaagtgaaggggtgttggatataatgcaggatggctacggttttttaagaagtagc
gattacaattatttatcttcccctgatgatatttatgtttcccaatcacaaattcgttta
ttcggtttaaaaactggagataccgtaaagggaaccgtacggccaccaaaagaaggggaa
aaatattttcctttgattaaggtgaatcaaattaacggactcgacccacaagtggtgagg
gatcgtgtttcttttgaacatttaactccattgtttcctaatgaaaaatttaggctagct
gaaaagcaaagcacaatgtctacacgtattgtagatttgttctccccaattgggaaagga
caacgtggaatgatagtttcccagccaaaaacgggaaaaacaatgttgttgaaagatatt
gccaacgccattgcagccaatcatccagaggtttttcaattgatcttgttaatcgatgag
cgcccggaagaggttacagacatgcaacgccatgtgagaggggaagtaattgcttctacc
ttcgatgaacctgcagatagacacgtaaaagtggccaacattgttttggaaaaagcaaaa
cgactggtagaatgtgggcacgatgtggtagttcttttagactccattacgcgtttggca
cgagcttataacacagtgcagccagccagtggtaaagtattgagtgggggtgtagatgcc
aatgccttgcataaacctaagcgtttctttggtgctgccagaaatattgaaggcggtggt
tctttaacaattattgcgaccgcacttaccgatacaggttctaaaatggatgaggttatt
tttgaagagtttaaaggaacgggtaacatggaactgcagttggatagacgtatttccaac
aaacgtatcttcccagcaatcgacttaatttcttcttctacccgtcgcgacgacttatta
ttggacgaaaattccattcagcgtatgtggattatgcgtaagtatctatcggatatgaat
ccgattgaagccatggagtttatggagcaacgtataaaaatgactaaaaacaatgaagaa
tttttaatgacgatgaatcaataa
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