Galbibacter sp. BG1: HX109_10295
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Entry
HX109_10295 CDS
T06675
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gaa
Galbibacter sp. BG1
Pathway
gaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HX109_10295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaa03019
]
HX109_10295
03009 Ribosome biogenesis [BR:
gaa03009
]
HX109_10295
Enzymes [BR:
gaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HX109_10295
Messenger RNA biogenesis [BR:
gaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HX109_10295
Ribosome biogenesis [BR:
gaa03009
]
Prokaryotic type
rRNA helicases
HX109_10295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
DUF3194
Motif
Other DBs
NCBI-ProteinID:
QLE01925
LinkDB
All DBs
Position
complement(2333345..2335114)
Genome browser
AA seq
589 aa
AA seq
DB search
MNKFEQLGLNEQLLKAITDMGFETPSEVQEKAIPVLLANDTDMVALAQTGTGKTAAFGFP
MIQKIDVNNRTTQGLILSPTRELCLQIANELKLYSKYLPSLNVTAIYGGASITDQARQVK
RGTQIVVATPGRMKDMISRNMVDISKIEYCVLDEADEMLNMGFYEDITEILSHAPKEKST
WLFSATMPKEVATIAKKFMKNPTEVTVGTKNASTSNVQHEYYVVSGRDRYLALKRLADTN
PDIFSVVFCRTKRDTQKIAEKLIEDGYNAGALHGDLSQNQRDMVMKSFRTQQIQMLVATD
VAARGIDVDDVTHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIITKSELRKISAIERK
IQQKFESKKVPSAEEICEIQLYHLASKIKNTEINKEVENYLPAINDVLDGINREELIKKM
VSVEFGRFAEYYKKAGDLNVSGGDAGAQDFFGEGKVRYFINVGSRDGYDWMTLKDFLREQ
LDLDKDDVFKVDVKESFSFFNTDANHTDAVLAKFSEFKLDGRFINVEVSKNSRENSRGRS
GRSGGGGGKRNRRSDSGGGSKGFGEKRFGKKGGKGNKSGGGNRRSKKRF
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatttgaacaattaggactgaacgaacagctacttaaagccattacagatatg
ggctttgagacaccttctgaggtgcaggagaaagctattccggtcctactcgccaacgat
accgatatggttgctttggcacagacaggtacgggaaaaacagctgcattcggatttcct
atgattcagaaaatagatgtaaacaacagaaccacccaagggcttattctatccccaaca
cgtgaactttgtttgcaaattgctaatgaattaaaattatactctaaatatttaccctct
cttaatgtaactgctatttatggcggtgcaagtattacagaccaagcaagacaggttaaa
agagggacacagattgtagtggctacaccaggccgaatgaaagacatgataagccgtaat
atggtagacatttctaaaattgagtattgtgtactcgatgaagcagatgaaatgttaaac
atgggcttttacgaagatattacagagattctttcgcatgcacctaaagaaaaaagcact
tggttattttctgcaaccatgcctaaagaggttgctactatcgctaaaaagtttatgaaa
aaccctacagaagtaactgtaggaaccaaaaatgcatctacttccaatgttcagcatgaa
tattatgtagtaagtggtagagaccgttatttagcattaaaacgtttggcagacaccaac
cccgatattttttcggttgttttctgtagaaccaaacgcgatacccaaaaaattgctgaa
aagcttattgaagatggttataatgcgggtgccttacacggagatttgagtcagaaccaa
cgtgatatggttatgaaatcttttaggacccaacaaatacaaatgttggtagctaccgat
gttgccgcaaggggaatcgatgtagacgacgtaacccacgttataaactatcaacttcca
gacgaaattgaaacgtatacccaccgtagtggacgtaccggtagagctggaaagtctggt
atttctatggtgattattaccaaaagtgaacttcgtaagataagcgcaatagagcgtaaa
attcagcagaagttcgagtccaaaaaagtgcctagtgccgaagagatttgcgaaatacaa
ctatatcaccttgctagcaaaataaaaaatacagaaatcaataaggaagtagagaactat
ttgcctgctattaatgatgtattggatgggattaaccgtgaagaactgattaaaaaaatg
gtttctgtagagtttggacgctttgcggaatactataaaaaggcaggagatttaaatgtt
tctggtggagatgctggagcacaagatttttttggagaaggaaaagtacgttactttatt
aatgtaggttcccgagatggttacgattggatgactttaaaggatttcctacgcgaacag
ttggatttagacaaagacgacgtgtttaaagtagatgtaaaagaaagtttttctttcttt
aataccgatgcaaaccataccgatgctgttcttgccaagttctctgaatttaaattggac
ggacgctttataaatgtagaagtatctaaaaattctagggaaaattcacgtggccgtagc
ggtcgctccggtggcggaggcggtaaaagaaaccgacgaagcgatagtggtggaggttct
aaaggatttggagaaaaacgctttggtaaaaaaggcggaaaaggaaacaagtctggcggt
ggtaaccgaagatctaaaaaaaggttttag
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