Galbibacter sp. BG1: HX109_11900
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Entry
HX109_11900 CDS
T06675
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gaa
Galbibacter sp. BG1
Pathway
gaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HX109_11900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaa03019
]
HX109_11900
03400 DNA repair and recombination proteins [BR:
gaa03400
]
HX109_11900
Enzymes [BR:
gaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HX109_11900
Messenger RNA biogenesis [BR:
gaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HX109_11900
DNA repair and recombination proteins [BR:
gaa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HX109_11900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Peptidase_C47
Enc34_ssDNA-bd
Motif
Other DBs
NCBI-ProteinID:
QLE02225
LinkDB
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Position
complement(2734634..2736541)
Genome browser
AA seq
635 aa
AA seq
DB search
MDTTLKPQAVLEKYWGFTSFKDPQETVIEHTIDGKDTLVLLPTGGGKSICYQIPALAKEG
ICIVVSPLIALIKDQVNTLKKKGIKAIALTSGLKFEEVDSLLDNCIYGNYKFLYLSPERL
QQELVQERIKNMNVNLIAIDEAHCISQWGNDFRPAYRNCNILKEFFPNTPMMALTASATE
LVAKDIMENLQLNNPITIKKTFRRENLSYQVYHTEDKLTKLEHILKENNRAAIVYVRSRR
ATVETTEILNKVGISAAFFHGGLTSEEKTKRLDSWLQDYTRVMVATNAFGMGIDKPNVGV
IAHINFPESLESYYQEAGRAGRDGENSIAVLLKNESDEIQLKNQFIKTLPSVDFVKLLYK
KLNNYFQIPYAEGSQQTFALNFNEFCATYSLNPILAFNALRVLDKHSVLSFLQTHLKKTS
IQFTCSNPQLFYYLDQHPSVEKIVQTILRTYGGVFDIATNINLSLIAKKTNTFEKRVLQT
LEQLEKDNIISLEATDTDASITFLVPREDDKTINIIAKEIEQQNKLKIQKVKAVVDYVNN
DKVCKSLQLLRYFDEDVKDPCGICSVCLQKKSNISPDILSIAKEEVLKCLQKQPMSSKQL
AEDITFKEIYILEALKDLFAEEEIALNDKNEYRLP
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atggataccaccttaaaacctcaagcagttttagagaaatattggggttttacttctttt
aaagatccacaggaaacggtaattgaacacaccatagacggaaaagacactttggtgtta
cttcccactggaggtggtaaatctatttgctaccaaatcccggcattggcaaaagaaggt
atttgcattgtggtctccccccttatcgcccttataaaagatcaagtaaatactttaaaa
aagaaaggcatcaaagccatcgcccttacaagcggtttgaaatttgaagaagtggattcc
cttttggataactgtatctacggaaattataaattcttgtacttatcaccagaaaggcta
caacaagagctggtgcaggagcgcattaaaaatatgaacgtaaatcttattgcaatcgat
gaagcccactgtatctcccaatggggaaacgattttaggcctgcataccgcaattgcaat
attttgaaggaattctttccaaacacccccatgatggcacttacagcttcagcaacagag
cttgttgcgaaagacatcatggaaaaccttcaactgaacaacccgataaccataaaaaaa
accttccgaagggagaatctttcctatcaagtttatcatacagaagataaacttaccaag
ctcgagcatattttaaaagaaaacaatcgggctgctattgtttatgtgcgtagccggagg
gcaacagtagaaaccactgaaattttaaacaaggttggaataagtgccgctttttttcat
ggcggactaaccagtgaagaaaagaccaagcgattggattcttggctgcaggactacacg
cgggtaatggtagctaccaatgcctttggaatggggatcgataagcccaatgtaggtgta
atagcacatataaactttcccgaatctttagaaagttattatcaagaagcgggaagagca
ggaagggacggggaaaattccattgccgttttattaaaaaatgaaagtgacgagatacaa
cttaaaaatcagtttataaagacgttgcccagtgtagactttgtaaaattgctctacaaa
aagcttaataattatttccaaataccttatgccgaaggctctcaacaaacttttgcttta
aatttcaatgaattttgcgctacctattccttgaatcccatactggcctttaatgcattg
agagtattggataagcattcggtactttcttttttgcaaacacaccttaaaaaaaccagc
atccagtttacctgtagcaatccgcaattattttattatttagatcagcatccttccgta
gaaaagatagttcaaactattttaagaacctacggcggtgtattcgatatcgctaccaac
attaatttatcgctcattgccaagaaaacaaataccttcgagaaaagggtgttgcagaca
ttggagcaactggaaaaggataacatcatttccttggaagccaccgataccgatgcatcc
attacctttcttgttcctagggaagatgataaaaccatcaatattattgccaaggagatc
gaacaacaaaataaacttaaaatacaaaaagtaaaagcagttgtagattatgtaaacaac
gacaaggtttgcaaaagcctacaacttctcaggtatttcgatgaagacgttaaagatccc
tgcggaatctgttcggtttgtttgcaaaagaaaagcaacatctcccctgatattctttcc
attgccaaagaagaggttttaaaatgcctgcagaagcaacctatgagctccaaacaactg
gcagaggacattacatttaaagaaatttatattctggaagcgttgaaagatctttttgct
gaagaagaaattgccttgaacgataagaatgaatatcgcctcccgtag
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