Gossypium arboreum (tree cotton): 108450561
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Entry
108450561 CDS
T05776
Name
(RefSeq) transcription elongation factor SPT6 homolog isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gab03021
]
108450561
03036 Chromosome and associated proteins [BR:
gab03036
]
108450561
Transcription machinery [BR:
gab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
108450561
Chromosome and associated proteins [BR:
gab03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
108450561
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
Tex_central_region
HTH_44
HHH_9
SH2
OB_PDCD11
HHH_3
Tex_N
Motif
Other DBs
NCBI-GeneID:
108450561
NCBI-ProteinID:
XP_017603733
UniProt:
A0ABR0NIT9
LinkDB
All DBs
Position
10:complement(118238464..118247365)
Genome browser
AA seq
1584 aa
AA seq
DB search
MGRNVISDEEDELEVDEEGEPMEGDNINDRDPDDEDEEDEDGQDEYENDGFIVDDVEDED
VDEDEEREDSDEERRKKKKKRKKKEAEDLDEDDYELLRENDVNVPKGSKKFKRLKKARRD
FDEEQFGLSDDEFDGGMKGSATAEEKLKRTLFGDDDGQPLEDIAEDEEPIEEEEDGDMGE
EDEMADFIVEEDEEHGASVRRKKMKNKKSRHAPDVSSSALKEAIDIFGDVDELLLLRKQG
LDSSEQKEGRLEDQFEPTVLSEKYMTEKDDQIRMTDIPERMQISEESTGTPPIDELSIIE
ESTWIFNQLINGAVPLFGKERQDHFINKDDIMRFLDLTHVQKLDIPFIAMYRKEQCLSLL
QDPEQHEVDDDQDKSEKAPTMKWHRVLWAIQDLDRKWLLLQKRKSGLQSHYNKRFEEESR
RIYDETRLNLNQQLFESILKDLRGAESEREVDDVDAKFNLHFPPGEVGVDEGQYKRPKRR
SQYSICNKAGLWEVASKFGYSAEQLGAHLSLEKMDDELEDAKETPEEIASNFTCAMFETP
QAVLKGARHMAAVEISCEPSVKRCVRNIFMDNAVVSTSPTPDGKIAIDSFHQFAGVKWLR
EKPLTRFDDAQWLLIQKAEEEKLLQVTIKLPEKFLNKLIKECNDQYLSNGVSKSAQQWNE
QRKLILHDALFGFLLPSMEKEARSLLASRAKNRLLLEYGKDLWNKVSVGPYQKKESDVSS
DEETAPRVMACCWGPGKPATTFVMLDSSGEVLDVLYTAALTLRSQNVHDQQRKKNDQQRV
LKFMTDHQPHVVVLGAVNLSCTRLKDDIYEIIFKMVEENPRDVGHEMDELSIVYGDESLP
RLYENSRISTDQLPGQSGIVRRAVALGRYLQNPLAMVATLCGPGKEILSWKLNPMENFLT
ADEKYGMIEQVLVDVTNQVGLDANLAASHEWLFAPLQFISGLGPRKAASLQRSLVRVGTI
FTRKDFLSAHGLDKKVFVNAVAFLRVRRSGLAANSSQFIDLLDDTRIHPESYLVAQELAK
DVYDEDLKGDNDDEDALEMAIEHVRDRPGLLKRLRLENYLKSKDRQNKRETFYDIRRELI
QGFQDWRKPYKEPSQDEEFFMISGETEDTLAEGRIVQATVRRVQGGRAICALESGLTGII
MKEDYADDWRDIIELSDRLREGDILTCKIKSIQKNRYQVFLVCKDSEMRSSRHQNVQNLD
PYYHEERSSIQSEQEKARKEKELAKKHFKPRMIVHPRFQNITADEAVEYLCDKEPGESIV
RPSSRGPSYLTLTLKVYGGVYAHKEIVEGGKEHKDITSLLRIGKTLKIGEDTFEDLDEVM
DRYVDPLVSHLKAMLSYRKFRKGTKSEVDKLLTIERQEYPMRIVYCFGISHEHPGTFILT
YIRSTNPHHEYVGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQNESAPSIRSVAAMVPM
RSPAAGSSAGASTGSGWGGPTNEGSWRGQSSDRGQSSTPGSRTGRNDYRNSSSRDGHPSG
APRPYGGRGRGRGSYNSSRGHNEGQDSSYNGTPKRDSGNKKGEDGWGNFPGAKVQNSPGR
EAFPGGWGGSAGTQSGSGSGSGWQ
NT seq
4755 nt
NT seq
+upstream
nt +downstream
nt
atgggaagaaacgttatctctgatgaagaagatgagttggaggtcgacgaggaaggagag
ccgatggaaggggacaatatcaatgaccgcgaccctgatgacgaggatgaagaagacgag
gatgggcaggatgagtatgagaatgatggattcatagttgatgatgtggaggatgaagat
gtagatgaagatgaagagagggaagatagtgacgaagagaggaggaagaaaaagaaaaaa
agaaagaagaaggaagctgaggaccttgatgaagatgactatgagcttctacgggagaat
gatgttaatgtaccgaagggaagcaagaaatttaagcggttaaaaaaggctcggagagat
tttgatgaggagcaatttggactttctgatgatgagtttgatgggggcatgaagggtagc
gcaactgctgaggaaaagcttaagcgtactctatttggtgatgatgatggacaacctctt
gaagatattgctgaagatgaagagccaatagaagaggaagaggatggagatatgggtgaa
gaagatgaaatggcagactttattgtagaagaagatgaggagcatggagcttctgttaga
cggaagaagatgaagaataagaagtcaaggcatgcaccggatgtttcatcatctgcttta
aaggaagctatagatatctttggtgatgtggatgaactcctgctgttacgcaaacagggc
ttagattctagtgagcagaaagaagggcgacttgaagatcaatttgaaccaactgttctt
tctgaaaagtacatgaccgaaaaggatgaccaaattcggatgactgatattccagaaaga
atgcagatctcagaggaaagcaccggcactcctccaatagatgaacttagcataattgaa
gagagcacctggatatttaaccaacttataaatggtgcagtaccattatttggtaaagaa
aggcaggatcattttataaacaaggatgacattatgagatttttggatctaactcatgta
cagaagttagatattccctttattgcgatgtatcgcaaggagcagtgtcttagtctgctt
caagatcctgagcaacatgaggttgatgatgatcaggataaatctgaaaaagcacctaca
atgaagtggcacagggtgctttgggcaattcaggaccttgaccgaaaatggctgcttctt
caaaagagaaagagtggtcttcagtcgcactacaataagcggtttgaagaagaatcacga
cgcatatatgatgaaacaagacttaatttgaaccaacagctttttgaatcaattcttaaa
gatctcaggggagcagagtcagaaagggaagttgacgatgttgatgccaagtttaacttg
catttcccacctggggaagttggtgttgatgaaggtcaatataagaggcccaagaggaga
tcacaatatagtatttgcaataaggctggcctgtgggaggttgcgagcaagtttggatac
agtgctgagcaacttggagcacatctatctctggaaaagatggatgatgagttggaagat
gcaaaggagacaccagaggagatagcttcaaattttacatgtgcaatgtttgagactcca
caagctgtccttaaaggagccaggcatatggctgcggttgagataagctgtgagccgtct
gtcaagagatgtgttcggaatatctttatggataatgctgtagtatcaaccagccctacc
cctgatggaaaaatagccattgattctttccatcagtttgctggtgtgaaatggttgcgt
gaaaaacctttgaccagatttgatgatgcacaatggctccttatccagaaggctgaagag
gagaagcttcttcaagtaactattaagctgccagaaaagtttcttaataagttgattaaa
gaatgtaacgaccaatatcttagtaatggtgttagcaaatctgctcaacaatggaatgag
cagagaaagctgatactgcatgatgctctttttggttttcttttaccctcaatggagaaa
gaagcaaggtccttgttggcaagtagagctaagaaccggttacttttggaatatggcaag
gacttgtggaataaggtttctgtggggccttatcaaaagaaagaaagtgatgttagttct
gatgaggaaactgcaccgcgagtcatggcctgctgttggggccctgggaagcctgcaacc
acttttgtgatgttggattcatctggggaggtgcttgatgtgctttatactgctgctctt
acattacggtctcaaaatgtacatgatcagcaacgcaagaaaaatgatcagcaacgtgtt
ttgaagttcatgaccgatcatcaaccacacgttgttgttcttggagctgtgaatttgtct
tgtactcgattgaaggatgatatctatgagattatttttaagatggttgaggaaaatcct
agagatgttgggcatgaaatggatgagctcagcatagtatatggggatgaatctctaccc
cgtctctatgaaaattctaggatttcaacagatcagctccctggccagtcaggcattgtt
aggcgggctgttgcccttgggcgttatcttcaaaatccattagcgatggttgccacattg
tgtggcccagggaaggagatactctcttggaagcttaatccaatggagaacttcctcacg
gcagatgagaagtatggcatgattgaacaggttttggttgatgtcacaaatcaggtgggc
cttgatgctaatttggctgctagtcatgaatggttgtttgctcctttgcaattcatttct
ggtcttggacctagaaaggcggcatcactgcagagatcattggtcagagttggaacaatt
tttactaggaaagactttttgtcagcccatggacttgataagaaggtgtttgttaatgcg
gtagcctttctgcgcgtcagacggagtgggcttgctgccaacagcagccagttcattgat
ttgctggatgacactagaatacatccagaatcttatcttgttgcccaagagttggccaaa
gatgtttatgatgaggatcttaagggtgataatgacgatgaggatgcattggagatggca
atagaacatgttagggaccggcctggtttgttgaaaaggcttcgtcttgagaactatcta
aaaagcaaggatcgacaaaataagagggagaccttttatgatataaggagggaattaatt
cagggcttccaggattggcgtaaaccgtataaggagcccagtcaggatgaggagttcttt
atgatttcaggtgaaacggaggataccctggcagaaggtcgaattgtgcaagctacagtt
agaagagtgcaaggtggaagagctatatgtgcacttgaatctggattgactgggattatt
atgaaagaagactatgcagatgattggagagatataattgagttatctgataggctgcgt
gaaggtgacatcttgacctgcaagattaaatcaattcaaaagaatagatatcaagtgttc
ctggtttgcaaagatagtgagatgagaagcagtcgacaccagaatgtccagaacctagat
ccttactatcatgaggagcgaagcagcattcaaagtgagcaagagaaagctcgtaaagag
aaggagctggcgaagaagcattttaagcccaggatgattgtccatccacgcttccaaaat
attactgcagatgaagctgtggagtatttatgcgacaaggaacctggagaaagtatagtc
cgtcccagttctcgtggaccttcttatttgactttaactctcaaagtctatggtggggtt
tacgcccataaagaaatagttgaaggtggtaaagagcacaaggacatcaccagcctgctt
cgcattgggaagacattgaaaattggggaagacactttcgaggatttggatgaggtgatg
gatcgatatgttgatccccttgtgtctcatctgaaggcaatgctgagttatcgtaaattc
aggaagggaactaaatcagaggttgataagcttctaacaatcgagagacaagagtatcct
atgaggattgtctattgttttggcatttctcatgaacatcctggcactttcattcttact
tatatacgaagtacaaatccgcatcatgagtatgttggtttatatcccaagggattcaag
ttcagaaaaaggatgtttgaggatattgatcgtctagttgcatatttccagaggcatatc
gatgatccacagaatgagtcagctccatcaataagatcagttgcagcaatggtaccaatg
cggagccctgctgctggatcctctgctggggcatctaccggtagtggttggggtggtcca
accaatgaaggcagttggagaggccaatcttccgacagggggcaatcttccactccaggg
tcaagaactgggcgaaacgattacagaaatagcagtagtcgagatgggcatccaagtggt
gcaccacggccctatggtggacggggacgtggtaggggttcatataatagcagcagggga
cataatgaggggcaggattcatcatacaatggaactccgaaacgggattcaggtaacaaa
aaaggggaagatggttggggtaatttcccaggtgctaaagttcaaaactctccaggtagg
gaagctttccctggtggttggggtggcagtgccggaacccaaagtggcagtggcagtggc
agtggttggcaatga
DBGET
integrated database retrieval system
