Gossypium arboreum (tree cotton): 108450599
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Entry
108450599 CDS
T05776
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108450599
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108450599
04121 Ubiquitin system [BR:
gab04121
]
108450599
03036 Chromosome and associated proteins [BR:
gab03036
]
108450599
03400 DNA repair and recombination proteins [BR:
gab03400
]
108450599
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
108450599
Ubiquitin system [BR:
gab04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
108450599
Chromosome and associated proteins [BR:
gab03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
108450599
DNA repair and recombination proteins [BR:
gab03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
108450599
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_6
zf-RING_UBOX
zf-HC5HC2H_2
zf-C3HC4_4
RTT107_BRCT_5
zf-C3HC4_3
zf-RING_5
zf-rbx1
PHD_NSD
Motif
Other DBs
NCBI-GeneID:
108450599
NCBI-ProteinID:
XP_017603778
UniProt:
A0ABR0R1I8
LinkDB
All DBs
Position
1:89543083..89548688
Genome browser
AA seq
1021 aa
AA seq
DB search
MKRMKKGGHGYGRRKDNSFPKMGDPSHLEKMGRELKCPICLSLLNSAVSLTCNHVFCNVC
ILKSMKSGSDCPVCKVPCRRREVRPAPHMDNLVSIYKSMEVASDFNIFVTQDVPLDTSAD
SRKRVKNDLNCCERVDNRGANKGKGSREAKSTETSDPISVKPSFPTNKRVQVPQYPLSET
PMLPEKNRGELIEIIKDESKMSSDILKENNLGEKGEQILSPFFWLREEDVERPSQLSDGD
QCVYVSPPGLPSFSDMKDSDDEGFSKEEVHGNRDHLNLFDNEMFEWTQGACSPELLSSPV
KMQVADTYEPASQGANTAEPSNNGTCMITGHDASEEMLPNIESFRIQCVSSNKIRSCKSK
ELGKKQRKTAQKNIADRTSSHISGDHVNLGKGSEDFNKKQKDDCSSSSYLAKTRKNCKVA
GLDHHVTEPMASHFSAKTPKQEDTPLAAIVGMGKCGDENENLRMVKRCRKITAQCEKKSC
SKLKKQKLSLAKVDTPKEVSTICEQKNEYMIQQKSSLPVPLAHDNAAEQFRKGLSKHTRE
VKLAPTLKSEKNSGCKKKIKVSFSDDMKSGLAEDQQQRGGNANISLERLSEKVHGRTTVG
ISESSTAKKLPPANGVALHKCETITIKIQCAFCLSMEETEASGEMVHYYEGSSVPLDYNG
GSKVIHSHKNCTEWAPNVYFENDKAINLEAELSRSQKIKCSCCGLKGAALGCYEKSCRKS
FHVPCAKLVSQCRWDTDNFVILCPLHASSKLPNEKSESQGIRKRCNLRGQLPIRHNEIPI
NDEVSVQKKWNPCESRNKLVLCCSGLTVEEKEIMSEFEKLAGVTVLKRWDSNITHIIAST
DKNGACKRTLKILMGILEGKWILNIKWVKACIKAMKLVDELQYEITIDVHGIRDGPRLGR
LRLQNKQPKLFDGCKFYIMGDFEPSYKGDLQDVLIAAGGTILHRKPISGDPGAPLLGSSA
FPIFIIYSVELPVKCDPSKKHMILSRRQLNAEALASSTGAKAVSNSWVLSSISACKLSLG
E
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgaaaaagggcggccacggctatggaagaagaaaggacaattcatttcca
aaaatgggggatccaagtcacctcgagaaaatgggcagggagctgaaatgccccatttgc
ttgagtcttttgaactctgccgtttcgctcacttgcaaccatgtattctgcaatgtctgt
attttgaaatcaatgaaatcgggttccgattgtcccgtctgtaaagtaccctgccggcgt
cgagaggttcgtccagcccctcacatggataacttggttagcatctacaaaagcatggaa
gttgcttcagatttcaatatatttgtcactcaggacgtgcctctggacacttcagcagat
tcccgaaagcgagttaaaaatgatctcaattgttgtgaaagagtggataatcggggagca
aacaaaggaaaaggatcaagggaggctaaatcaacggaaacttctgatcccatttctgtg
aagccttcttttccaactaacaaaagggttcaggtgccacaatatcccctttcagaaaca
cccatgctgcctgaaaagaatcgaggtgaattgattgaaatcatcaaggatgaatctaaa
atgagttcagatattctgaaggagaacaatctaggagaaaagggggaacaaatactttcg
ccctttttctggttgagggaggaggatgtagaaaggccaagtcagcttagtgatggggat
caatgtgtgtacgtatcaccacctggacttccttctttcagtgatatgaaggattctgat
gatgaaggcttttctaaggaggaggtgcatggaaaccgcgaccatctgaatctttttgat
aatgaaatgtttgaatggacacagggagcttgttctccagaacttctttcaagtcctgtt
aaaatgcaggttgcagacacctatgaacctgcatcacagggtgcaaatacagctgagccc
tctaataatggcacatgcatgataacaggacatgatgcttcggaggagatgctgcctaat
atagaatctttcagaatccagtgtgttagtagtaataagatcaggagttgtaaatccaag
gagttgggtaagaaacagagaaagactgcccaaaagaatatagctgacagaactagcagt
catatttctggagatcatgtcaatttgggaaaagggtctgaagattttaataaaaaacaa
aaagacgactgtagtagttcttcatatttggctaagactaggaaaaattgtaaggtggct
ggtttggatcaccatgtaactgaaccaatggcatcacatttttctgccaaaactcctaaa
caggaagacacaccattggctgccatagtgggtatggggaaatgtggtgatgaaaatgag
aatttgaggatggtaaaacgttgcaggaagatcactgcccagtgcgaaaagaaatcttgt
tcaaagttgaagaaacaaaagctaagtttggctaaggttgatacccctaaagaagtttca
accatttgtgagcagaaaaatgaatatatgattcaacagaagtcttcacttcccgttccc
ttagctcatgacaatgctgctgagcagttcagaaaaggattgagtaaacatactagagaa
gtaaagttggctccgactttgaaaagtgaaaaaaactcgggttgtaagaaaaagattaaa
gtttcttttagtgatgacatgaaaagtgggttggctgaagaccaacagcagcggggagga
aatgctaatatttctctagagagactaagtgaaaaggttcatgggagaaccactgttgga
atttcagagagctcaacagcaaagaagttgcctccagctaatggagtggcactgcataaa
tgtgagaccattacaattaaaatacaatgtgctttctgtctttctatggaagaaactgag
gcttctggagagatggttcattactatgaaggcagttctgttcctctagattacaatggt
ggctctaaggtcatacattcacacaagaactgcactgaatgggcccctaatgtttatttt
gaaaatgacaaggcaatcaaccttgaggctgaactctccagaagtcaaaaaataaaatgc
tcctgttgtggactcaaaggtgcagcattgggctgttatgaaaaaagttgtcgaaagagt
ttccatgttccctgtgcaaaactagtctcacaatgccggtgggatactgataactttgta
attttatgtcctctccatgcctcctctaagttgcctaacgaaaagtcagagtcccaagga
atccgaaaaagatgcaatttaagaggacagttgccgatacgccacaatgaaattcctata
aatgatgaagttagtgtgcagaagaaatggaatccttgtgaatcacgcaacaaattggtt
ctctgttgctcaggtctcacagttgaggaaaaggaaatcatgtctgaatttgagaaatta
gctggtgtgacagtgttgaagagatgggattcaaatattacccatatcattgcatccacc
gataaaaatggagcatgcaaaagaacccttaaaattttaatgggtatcttggaggggaag
tggatactgaatataaagtgggtcaaagcttgcatcaaagccatgaaacttgttgatgag
ttgcaatatgaaataactattgatgttcatggaatcagggatggtccccgacttggaagg
ctgagactccagaataagcaaccaaagctttttgatgggtgtaagttctatataatgggg
gattttgaaccttcctataagggagatctacaggatgttttaatcgcagcaggaggtacc
attctgcatagaaaacccatatcaggtgatccgggagccccattattgggttcctctgca
tttccaatcttcataatttatagcgtcgagttgcctgtcaagtgtgaccccagcaagaag
cacatgattttaagccgcaggcaattaaatgcggaagctctggcaagttcaacaggagcc
aaagcagtaagcaattcttgggttttgagctccatatctgcatgcaaattgagtcttggc
gaataa
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