Gossypium arboreum (tree cotton): 108451024
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Entry
108451024 CDS
T05776
Name
(RefSeq) LOW QUALITY PROTEIN: protein SPIRRIG-like
KO
K22262
WD repeat and FYVE domain-containing protein 3
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gab04131
]
108451024
Membrane trafficking [BR:
gab04131
]
Autophagy
Aggrephagy
Scaffold proteins
108451024
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beach
Beta-prop_TEP1_2nd
WD40_Prp19
WD40
PH_BEACH
NBCH_WD40
Beta-prop_EML
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_HPS5
DUF4704
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
108451024
NCBI-ProteinID:
XP_052884751
LinkDB
All DBs
Position
5:complement(5775920..5783697)
Genome browser
AA seq
1999 aa
AA seq
DB search
MGKTSSWCGEGYAGFRQVDTPIEAEAIAKLNLLFDNADLPAETSNCIVLSNANMVEHVLL
DWTLWVTSPVPIQIALLNFLEQLVSVHWYRNHNLTVPRQIDLVQHLLVTLQRGDVEVPVL
EKLVAVLGVVLEDGFLASELENVIRFVIMSFDPPEMKPHHQIMREPMGKHVIVRNLLLEM
LVDLQVXSEEMLEQWHRIVSSKLLTYLLDDAVHPTSMRWIMTLLGVRLASSPTFALKFRT
SGGYQGLMRVLTSFYDSPDIYYILFCLIFGKPVYPRLPEVRMLDFHALMPSDGGHVELKF
IELLESIIAMAKSTFDRLSMQSIIACQTGNFFQLAAELEENADMTAELQGEALMHKTYAA
RLMGGDASAPAATTAVLRFMVDLAKMCPAFSAVCRQTEFLECCVDLYFSCVRSGHTVKMA
RERSKETEEKNLNGYDDASSQNAPSRFPVEQEQSDKTSISAGSFMKPNTSQEESKKSLLE
DVQVTQSKDGDSVNQVTASSTNKFTCHNTDNLAIQPPDSQSSVALASPDSCIFSEKLNSK
SPLAPQSPIIALTSWLSSTSNHNESKNPMEPSTSIGVDQSFDLKSGPTTTNTAFPVIPKL
LLEMDDSGYGGGPCSAGAAAMLDFIAEVLANLLTEQIKAAQFVESILEMVPLYVEAESMM
VFQGLFLSRLMNFIERRLLHDNEEEEKKLDKTKWSSNLDALCWMIVDRVYMGAFPQPAVL
KTLEFLLSMLQLANKDGRIEDAAPTGKGLLSITRGSRQLEAYVHSVLKNTNRMILYRFLP
SFLISIGEEDLVSSFGLLTELTQRSLTNSSQDDPGIDISKVLQLLVAHRQIIFCPTNLDI
DLNCCLCVNLIYLIPDQTRNVQNLAIDVVKYLLVHRKSSLEDLLVSKPNKGQRLDVLHGG
FDKLLTGNLSSFFDWLRTSEEMINKVLEQCATIMWEQYVSGSAKFPGVIIKGMEGRRKRE
MGRRSRDTSKFEQKHWEQATERRYAVEGLRDTMXESEWQTHLQQLVHERGIFPIRKPSAS
RDPEWQLCPIEGPYTMRKKLECCKLRINSIQNVLDGXVGLSETELPKVKNEDGPDVSDSG
SKAIFNLLNEIELYDESLYKGSDDVKDVTSVKNGCNDDKAGSVTEASLHSALEYGAKSSA
VSVPMSEGIPGRSEAEFPGLSPSVRIDEIKVTEDKLDKALQNDSEYFIIPYLEQQEKIRF
RYNCERVVGLDKHDGIFLIGELFLYVIKNFYIDDTGCICEKECEDELSVIDXKKDVTGCM
DCLSKATSSWDTTPKALIGGRAWAYSGGVWGKEKVVASGNLPHPWRMWKLDSIHEILKRD
YQLRPVAVELFSMDGYNDLLVFHKRERDEVYKNLVAVNLPRNSMLDTTISGSTKQEINEG
GRLFKITAKSFSKRWQSGEISNFQYLMHLNTLAGRGYSDLTQYPVFPWVLANYESENLDL
SDPKTFPKLEKPMGSQTPEGEEEFKTRYESWDDPEVPKFHYGSHYSSAGIVLFYLLRLPP
FSAENQKLQGCQFDHADHLFSSIRDTWLSAAGKGNTSDVKELIPEFFYMPEFLENRFSLD
LGEKQSGEKVGDGHVPPWAKGSAREFIRMHREALESDFVSEDLHHWMDLIFGYKQRGKAA
EKAANVFYHYTXEGSVDIDAVTDPSMKASILAQINHFGQTPKQLFLKPHVKRRSDRKLPP
HPLKNSTLLVPHEIRKSSYSITQIVTFQEKILIGKANTKLKPRMYAKYVAWGFPDLSLRF
LSFDQDRLLSTHENLHLGNQTQCAGFSHDGHILVTGAXDGLVYVWKISEEHPRASSRLML
EKVLCAHRSKITCLHVNQPYMLIVSGSDGCTVIIWDLISLRFVWQLPEFPTSVSAVYVND
LTGEIMTAAGTLFAVWSINGCCLAVIRTSQVPSDYIISVTSSTFSDWLDTNWYVTGHHDG
ADKVWHMVHCTDIETISNSTSVGTTGGLPLDKSPEYRLLLHKVLRXHKHPVTSLFLTTDL
KQLLSGDSGGHLLSWRLPP
NT seq
6000 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaaacctcaagttggtgtggtgaagggtatgctggttttagacaagttgatact
ccaattgaggctgaagctattgctaaattaaacttattatttgataatgctgatctgcca
gctgaaacttcaaactgcattgtcttgtcaaatgcaaatatggtagaacatgttttgctg
gactggacactgtgggtaacttctccagttcccattcaaattgcactgttaaattttcta
gagcaacttgtgtctgttcattggtataggaatcacaaccttacagttcctcgtcaaatc
gaccttgttcaacatttattggtgactttgcagcgcggtgatgttgaagttcctgttttg
gaaaaattagttgcagtccttggggttgtattggaagatgggttcctggcatctgaactt
gaaaacgtgattaggtttgttattatgtcatttgatccacctgagatgaaaccacatcat
caaataatgcgtgagcccatgggaaagcacgttatagttaggaatttgcttctggagatg
cttgtggatcttcaagttnaatcagaagaaatgcttgaacagtggcatagaattgtttct
tctaaattattgacttatcttcttgatgatgctgttcatcctactagtatgagatggatc
atgactctccttggcgtacgtctggcttcttctcccacttttgctcttaaatttcgcact
agtggaggttatcaaggccttatgcgtgtgcttactagtttttatgattctcctgatata
tattatatattattctgcctcatatttgggaaaccagtttatccaagattgccagaagtt
cgtatgctggacttccatgcactcatgccgagtgatgggggtcatgtggagttgaaattt
atagaactattggaatctataattgctatggcaaaatccacctttgataggctgagcatg
cagtcaataattgcttgccaaacaggaaattttttccaacttgcggcagaactggaggaa
aatgcagacatgactgcggagcttcagggtgaagctctcatgcacaagacatatgctgca
cgcctaatgggtggggatgcatctgctcctgccgctacaactgcagttctgagattcatg
gttgatttggcaaagatgtgtcctgctttttcagctgtttgcagacagacagaatttcta
gaatgttgtgttgacctctatttttcttgtgttaggtctggtcacacagtgaagatggca
agagagcgttcaaaagagacagaagagaagaatttgaatggttatgatgatgctagttcg
caaaatgcgccctctagattccctgtggagcaggaacagtctgacaaaacttctattagt
gctggaagcttcatgaaacctaatacatcccaagaggaatcgaagaaatcattgctggaa
gatgtccaagttactcagagcaaagatggtgatagtgtcaatcaggttactgcctcaagc
acaaataagttcacctgccataataccgacaatctggctattcaaccaccagattcacag
agttctgtagctcttgctagtccagattcttgtattttctctgagaaattaaattccaaa
agccccctcgctcctcaatctcccattattgctctgacttcgtggttaagttcaacttca
aaccataatgaatccaaaaatcccatggagccttctacgtctataggtgttgatcaatcc
tttgacttgaagtctggaccaacaactacaaatactgcctttccagttattccaaagctt
cttctggaaatggatgattctggctatggtggtggcccttgttcagctggggcagctgct
atgttggattttatagctgaagtactggctaaccttttaacagagcaaataaaagcagca
caatttgtggagagcatcttggaaatggttccactatatgttgaagctgaatctatgatg
gtttttcaaggtttatttctaagcagactaatgaacttcattgaaaggcgtctcttgcat
gacaatgaagaagaagagaaaaagttagataagaccaaatggtcctcaaacttagatgca
ttatgctggatgattgttgatcgtgtttacatgggcgctttccctcaacctgctgtattg
aaaactctagaattcttgttatcaatgttgcaattagcaaacaaagatggtcgaattgaa
gacgcagctcctactggaaagggtcttttgtctattacaagaggtagcagacaacttgag
gcttacgtacattcagttcttaagaatacaaataggatgatattgtaccgcttcctacca
tcattcctgattagcataggggaagaagatctcgtttcctccttcggtctactaacagaa
cttacgcaaagatcactcacaaactcttcacaagatgatccaggaattgatatcagcaaa
gttttgcagttattagttgctcaccgacaaataatattctgtccaaccaatcttgatatt
gatctaaattgctgtctttgtgtaaatttaatttatcttattcctgaccaaacgcgaaat
gtacagaacctggcaattgatgttgtcaagtatttactggttcatcgaaaatcttctctg
gaagacctgcttgtctctaaacctaacaaaggacagcgcctagatgtactgcatggtggt
tttgacaaattgttgactggaaacttatcttctttctttgactggcttcggacatctgaa
gagatgataaataaagtactggagcaatgtgcaaccataatgtgggagcagtatgtttct
ggctcagcaaaatttcctggagtaataatcaaaggcatggagggccgtcgtaagagggaa
atgggaagaagatcacgagatacttcaaagtttgaacaaaaacactgggagcaagcgact
gaaaggagatatgcagtggaggggcttcgtgatacaatgnctgaaagcgaatggcaaacc
catctccaacaacttgtacatgaacgaggaatattcccaatccgtaaaccctctgcttct
agagatcctgaatggcaactttgccccattgagggtccatacacgatgcgcaaaaagctt
gagtgctgtaaattaagaattaacagtatccaaaatgttcttgatgggncagttggatta
agtgagacggagcttcccaaggtaaaaaatgaggatggtccagatgtttctgattctggt
tccaaagctattttcaatcttttgaatgaaattgaactatatgatgaatcattgtataaa
ggatcagatgacgtgaaggatgtaacttctgttaaaaatggctgtaatgatgacaaagct
ggcagtgtaactgaagctagtcttcactcagcacttgagtatggtgcaaaatctagtgca
gtttctgttcctatgtcggaaggcataccaggaagatctgaagctgaatttcctgggctg
tcaccttctgttaggattgatgaaatcaaagttacagaggataaattagataaggcgctg
caaaatgatagtgaatattttatcataccttatttagaacaacaggaaaagattcgattc
agatataactgtgagcgagtagttggtctggacaaacatgatggtatatttctgataggg
gaactttttttatatgtaataaagaacttttacattgatgatactggctgcatatgtgag
aaggaatgtgaagatgagctctctgttattgatnttaagaaggatgttactggctgtatg
gattgcctatcaaaagcaacttcatcctgggacacaacaccaaaggcattgataggggga
agagcctgggcctacagtggtggtgtatggggaaaggagaaagtggttgccagtggtaat
ttacctcacccttggcgtatgtggaagcttgatagcattcatgagattttaaagcgtgat
taccagctacgtcctgttgctgttgagttgtttagcatggacggatacaatgatctcctg
gtgtttcacaaaagagaaagagatgaagtatacaaaaatctggttgccgtgaatctgcca
aggaacagcatgttggacacaacaatttcaggatcaacaaaacaggaaatcaatgagggt
ggtcgtctctttaaaataacagctaaatctttctcaaagagatggcaaagtggagaaatc
agcaatttccagtacctcatgcatctcaataccttggcaggacgtggatatagtgatctt
actcaatacccagtcttcccatgggttcttgctaattatgagagtgaaaatctggacttg
tcagatcccaaaaccttccccaaacttgaaaaaccaatgggcagtcagacaccagaaggg
gaagaggaatttaagaccagatatgagagctgggatgacccagaggtcccaaaatttcat
tatggttctcactattctagtgctggcattgttctcttttatctccttcgcttgccacca
ttcagtgctgaaaaccagaagctacagggttgccagttcgatcatgctgatcatcttttc
agtagcataagagacacttggttgagtgctgctgggaagggtaacacatcagatgtgaaa
gaactgatcccagaattcttctacatgcctgagtttttggaaaatcgcttcagtcttgac
ttgggtgagaaacagtcaggggaaaaggttggtgacggtcacgttcctccttgggctaaa
ggaagtgctagggagttcattcggatgcatagagaggccttagaatccgattttgtttcg
gaagatcttcaccattggatggacctcatttttggatataaacaaagggggaaggctgct
gaaaaagctgctaatgttttctaccactacacanntgaagggagtgtggatatagatgca
gttacagatccttcaatgaaagcttccattctagctcagatcaatcattttggacagaca
cctaagcaactattcctgaaaccgcacgtgaaaaggcggtctgatagaaagcttcctcct
catccactgaagaattcaactcttcttgttccacacgaaatacggaaaagctcttattcc
attactcagatcgtcactttccaagagaaaattcttattggcaaggcaaacactaagctt
aaacctcgaatgtatgccaaatatgtcgcatggggtttccctgatctcagcttgagattt
ttgagttttgaccaagatcgactcctttcaacacatgagaatcttcatttaggaaaccaa
actcagtgtgctggttttagccatgatggtcacattttggtcactggcgcttaggatggt
ctagtttatgtttggaaaatcagcgaggagcatccgcgtgcctccagtcgtttgatgtta
gagaaagtgctttgtgctcacagatccaaaatcacatgtcttcatgtcaatcagccttat
atgttgatcgtgagcggatcagatggctgcactgttatcatatgggacctcatctcctta
agattcgtttggcaacttcccgaattcccaacatcagtttctgctgtctatgtgaatgat
ttaactggtgaaattatgactgctgctggaactctatttgctgtttggagcatcaatgga
tgctgtctagcagtaattagaacatcccaggtgccatctgattatataatctctgtgaca
agttcaaccttctctgattggctggacacaaactggtatgtaacaggtcaccacgatggg
gctgataaggtctggcatatggttcactgtactgacatagagacgataagtaattcgact
agcgttggaaccacaggagggttgcctttggacaagtcaccagaatacagattgctcctc
cacaaggtattgcgtnttcataagcaccctgttacttcccttttcttaactactgatttg
aagcagttgctgagtggtgattctggcggccatttgctgtcgtggaggttaccgccctga
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integrated database retrieval system
