Gossypium arboreum (tree cotton): 108451025
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Entry
108451025 CDS
T05776
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC108451025
KO
K06100
symplekin
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108451025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gab03021
]
108451025
03019 Messenger RNA biogenesis [BR:
gab03019
]
108451025
Transcription machinery [BR:
gab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108451025
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
108451025
U7-dependent histone pre-mRNA processing factors
108451025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
108451025
NCBI-ProteinID:
XP_052883453
LinkDB
All DBs
Position
5:complement(19649027..19666760)
Genome browser
AA seq
1309 aa
AA seq
DB search
MAIADSRDQAFSLLIAANNHADLAVRLSSLKQAKDIFSSLFPSSAADLFPYLTDLQGSPH
SLVRKFLVEIIEDIALKAIEHSSLLVLVLVAFLRDVDSDVVKQSIVSGRNFFCCVLEEMA
LQFQQNGKVDQCLEELWIWMVRFKDGVFSTAMEPGPLGAKLLSLKFLETYVLLFTSDNVD
SANFLEGSRQTFNVSWLSGGHPILDPVALTSDANRTLFILLGMLQSASSLPVSVTITIVN
CLAAIARKRPLHYGTVLSALLDFNPNCETLRGCHYVSIQFSLRTAFLGFLRCTYPAIVES
RERLLRALRAMNAGDAADQVIRQVEKMIKNSERASRETRSSRDDQSSRQPYVVGDVSKKR
FMPQDNEELTNGFEMVSKCIHSGSNSHPIPHAQINDSGQDFASVNGQSPSFPLSDGNLTA
VGQMISMAGALLAEGERERGAESLEILISKIHSDLLADIVITNMSHFPKSPPPLTSFGTL
LITKQTDYVNSVTQAVQPPGPTNSLDAPVAQLPSTSAATTSSSISDISIVNIAAETKRDP
RRDPRRLDPRQAAVSVGVSSLPVLEDTGTAMAEFDGSISIKPLSVPVVENLPVHLTSNVQ
SYDKVIEGPSVSAIKQPAPEGDVLSVNEDIVPILEVNTSSNCALSPPGMVDENAAEMKVD
AEAKHEIDASSFPESEENYLASTTISSLDETGRDLPAESYLHLHWSECRQTHMALLGRLV
GQIYADEEVVVMLGKQIVVDYQQQKGHKIVLHILYHLYSFTVSNADDTSSYSGVIYEKFL
LAVAKYLLDTFPASDKSFSRLLGEVPFLPDSALKLLDDLCCFNVFDATRKETRDAERVMQ
GLGVVWSLILGRPNNRQACLSKALKAAVNSQDDIRGKAIQLVANKLYQLDYISGEIEQFA
TNMLLSAVDRHAAGAEFLHSGSADERGEMEVRSGYTSTTGSQFQEPRVSGIDSMIAESTT
NSASVVSFAEAQRLISLVFSLCTKKPSLLQFLFDVYGRAPKTVKQVFHRHIPIVIRALGQ
SCSQLLQIISDPPQGSENLLTLVLQILTQETIPSPDLVATVKYLYETKLKDATILIPILS
SLSKNEVLPIFPRRVDLPLEKFQLALAHILQGSAHIGPALTPAKALVAIHDIIPEKGGLP
LKKITDACSACFEQRTVFTLQVLAKALNQMVDQIPLPLLFMRTVIQAIDAFPTMVDFVME
ILSKLXVNRSVWRMPKLWVGFLKCVAQTQPHSFPVLLQLPPPQLESALNKYGSLRSSLAA
YKNQPTRKGSLPRSTLAVLHLANESHMQQPHVSTLHPSDTSSAQVATLA
NT seq
3930 nt
NT seq
+upstream
nt +downstream
nt
atggccattgcagattctagagaccaagccttctctctactcatcgccgctaacaaccac
gccgatttggcggtgaggctttcatctctcaaacaggccaaagatattttttcgtcactc
tttccttcctccgctgccgatctcttcccttacctcactgacctacagggttcccctcac
agcctcgttagaaagtttctcgtcgagattattgaagatattgcattgaaagcaatagaa
cattcttctttactagtacttgtgctggtagcgtttttgagggatgttgactctgatgtt
gtgaaacaatctatcgttagtggaaggaatttcttctgctgcgtcttggaagaaatggca
ttacagtttcagcagaatggtaaagttgaccaatgtctcgaagaactatggatatggatg
gttaggttcaaggacggtgtgttttccactgcaatggagcctggtcctcttggggcgaag
ttgctgtctctgaaatttttggagacgtatgtcttgctttttacatcagacaatgttgat
tctgcaaattttcttgaaggaagtagacagacttttaatgtatcatggctaagtggtggt
catcctatcttggatccagttgcactaacatcggatgcaaacaggactcttttcatttta
ttgggcatgttgcaatcagccagtagtctccctgtctctgtgacaattaccattgtcaat
tgtcttgctgccatagcaaggaagagacccctccattatggcactgttctatctgcactg
cttgattttaatccaaactgtgagactttaagaggatgtcattatgtcagcattcagttt
tccttgagaactgcatttttgggattcctgaggtgtacttatccagcaattgtagagtca
agagagagattgcttagagctttaagagcgatgaatgctggggatgctgctgatcaagtc
atcagacaggttgaaaagatgataaaaaatagtgagcgtgcttcacgggaaactcggtca
agcagggatgatcaatcatctcgccaaccatatgttgtaggggatgtgtcaaagaaaaga
tttatgcctcaggataatgaagaactaacaaatggttttgagatggtctccaagtgtatt
cactctggttccaattcccacccaataccacatgctcaaataaatgattctgggcaggat
tttgcttctgtgaatggacaatcgcctagttttcctctttcggatggtaatttaactgct
gttgggcaaatgatctcaatggctggtgctttactagctgaaggagaaagagaaagaggt
gctgaatctcttgaaattcttatttcaaaaattcattctgatctgctggctgatattgtc
atcacaaatatgagccactttcctaaaagtcctcctccattaacaagctttgggactttg
cttataactaaacaaacagattatgtaaatagtgtgactcaagctgtgcagcctcctggt
ccaacaaattctttagatgctcccgtagcacaattgccctctacttcagctgctacaact
agttcatcaatatctgatatatctattgtcaatattgctgctgaaaccaaacgtgacccg
agaagggaccctcgtcgcctagatccacgacaggctgctgtatccgttggagtgtcatct
ttaccagttttggaggacactggcactgctatggctgagtttgatggctctatttctatc
aagcctctttcagttccagttgttgaaaatcttcctgtgcatttgacatctaacgtccaa
agctatgataaggtaattgaaggtccatcagtttctgctattaagcagccagctcctgaa
ggggatgttctgagtgttaatgaagacattgttcccattctagaggtcaatacttcttcc
aattgtgcactttctcctcctggtatggttgatgaaaatgcagctgagatgaaggtagat
gctgaagcgaaacatgagattgatgcgtcatcttttccagagtctgaagaaaactatctg
gcttctacaaccatatcttctttggatgagactggtcgggatttacctgctgaatcatac
ttgcatcttcattggtcagaatgtcgccaaacacatatggcattacttggtcgattggtt
ggtcagatttatgctgatgaagaagttgttgtcatgttgggaaaacaaattgttgtggat
taccaacaacaaaagggtcacaagattgtgttgcacattctctaccatctgtattctttc
acagtttcaaatgcagatgatacctcttcgtattctggtgttatttatgaaaaatttctc
ctggcagtggccaaatacttgctggatacttttccagcctcagataagtcattcagcaga
cttcttggtgaagttccattccttcctgactctgccttgaaactattagatgatctctgc
tgctttaatgtgtttgatgctactcggaaagagactcgtgatgctgagcgtgtgatgcag
ggccttggtgtagtgtggagtttaattttgggtcgtccaaataatcggcaagcctgctta
agtaaagcattgaaggctgctgttaattctcaagatgacattcgaggtaaagccatccag
ctggtagcaaacaaactttatcagctggactacatatctggagaaattgagcaatttgca
acaaatatgttgctctctgctgtcgatcggcatgctgcaggtgcagagtttttgcattct
gggtccgctgatgaaagaggtgaaatggaggtgagaagtggatacacatccactactggc
agccaatttcaagagcccagagtttccggaattgactccatgattgcagagtcgacaact
aatagtgcttcagtagtgtcatttgctgaagctcaaagactcatttctctggttttttct
ttatgcacgaagaagcctagtcttcttcaattcttatttgatgtttatgggcgagcacca
aaaactgtaaagcaggtgtttcatcgtcatatccctattgtaattagagccttaggtcag
tcttgttctcagttactccaaataatatctgacccaccacaaggaagtgaaaatcttttg
acattggtgctgcaaatactgactcaagaaacaattccttctcctgatttagtagctact
gtgaagtatttgtatgaaactaagctgaaggatgccaccatccttattccaattttatct
tctctttccaaaaatgaggtgttacctattttccctcggcgtgtggaccttccattggag
aaattccagcttgcgcttgctcacatattacagggttcagctcacattggtcctgctttg
acccctgccaaagctttagttgccatccatgacatcatccctgaaaaaggtggccttcca
ctcaagaagataacggatgcttgctcagcttgtttcgagcagagaacagtttttacgctg
caggtcttagctaaggccttgaatcagatggttgatcagatccctcttcctttacttttc
atgagaacagttatacaggcaattgatgcttttcctaccatggttgattttgtcatggaa
atcctatccaaattgtgagtaaacaggtcagtctggagaatgccaaagttgtgggttggg
ttcttgaaatgtgtggctcagacacaaccacattcttttcctgttttgttacagttgccg
cctccacaacttgaaagtgcactgaataaatatggtagtctcagaagttctctggctgct
tataaaaaccaaccaactagaaagggttcactgcctagatcaacactagctgttcttcat
cttgcaaatgagtcccatatgcagcaaccgcatgtatcaaccttgcatccttcagatact
tcttcagcccaggtagcaactctggcgtga
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