KEGG   Gossypium arboreum (tree cotton): 108452019
Entry
108452019         CDS       T05776                                 
Name
(RefSeq) sm-like protein LSM1B
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
gab  Gossypium arboreum (tree cotton)
Pathway
gab03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gab00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108452019
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gab03019]
    108452019
Messenger RNA biogenesis [BR:gab03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     108452019
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     108452019
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 108452019
NCBI-ProteinID: XP_017605275
UniProt: A0A0B0PWG1
LinkDB
Position
7:complement(104264109..104267046)
AA seq 128 aa
MSWAGPDDIFLSTSLATYLDKKLLVLLRDGRKLLGLLRSFDQFANVVLEGACERVIVGNL
YCDIPLGLYVIRGENVVLIGELDLEKEELPSHMTAVSAAEIKRAQKAEREATDLKGSMRK
RMEFLDFD
NT seq 387 nt   +upstreamnt  +downstreamnt
atgtcttgggctggccctgatgatatctttctctccacttcccttgctacttatctagac
aagaaactccttgtcttgcttagagatggccggaagcttttgggattactacgttcgttt
gatcaatttgctaatgttgttctagaaggcgcttgtgagcgagttattgttggcaatttg
tactgtgatatccccttgggtctatatgtaatccgtggggagaatgttgtcttaatagga
gagctggacttggaaaaggaagagcttccatctcatatgaccgctgtgtcggctgctgag
attaaaagggcacagaaagccgaaagggaagcaacagatctgaagggctccatgagaaaa
cgaatggagtttctcgatttcgactaa

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