Gossypium arboreum (tree cotton): 108452665
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Entry
108452665 CDS
T05776
Name
(RefSeq) LOW QUALITY PROTEIN: polygalacturonase
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab00040
Pentose and glucuronate interconversions
gab01100
Metabolic pathways
Module
gab_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108452665
Enzymes [BR:
gab01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
108452665
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
Motif
Other DBs
NCBI-GeneID:
108452665
NCBI-ProteinID:
XP_052885118
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Position
5:91295207..91296810
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AA seq
417 aa
AA seq
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MAPHLNIVPSMFVLLLLFISXSKVQSDAFDVVAKFGIKVDGKRIXVRQVQLLLTLYPKAI
LDAWKEACASVTPSTVVIPKGTYLLSKVNLEGPCKAPIEINVQGTIXAPTDPSAFKDPNW
VRFYSVENFKMFGGGIFDGQGSIAYEKNTCENREFRSKLPVNIRFDFVTNALIQDITSKD
SKLFHINVFACKNITLERLKIEALGREPKHDGIHMGKSRGQYYCLDIKTGDDCISIGDGT
KXMVIKEITCGPGHGISIGSLGKFQNEEPXEGIKISNRTITNTXNGARIKTWPXEHGGAR
SXIHFEDITMNNVSXPILIDQQYCPWNKCKKNEESKVKLSNISFKNIRSTSALXEAIKFI
CGGSSPCQNVELADIDIKHNGVNXATSQCLNVKPITSGKLNPIPCSGPVPKTPSATA
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atggcaccacaccttaatattgttccttccatgtttgtacttttattattattcatttca
ncctctaaagttcaatcagatgcttttgatgttgttgccaagtttggcataaaagtcgac
ggaaaacggatttgagtaaggcaagttcaattgctcttaactttgtaccccaaagccatt
ttggatgcttggaaagaagcatgtgcctcagtaactccatcaacagttgtgattcctaaa
gggacatatttattatcaaaagtaaacttagaaggtccatgcaaggctcctattgagatt
aatgttcagggcactatcnntgctcctactgatcctagtgctttcaaagaccctaattgg
gttagattctatagtgttgaaaatttcaaaatgtttggcggaggaattttcgatggtcaa
ggaagcattgcttatgagaagaatacttgcgagaatcgtgaatttcgttccaaacttccc
gttaatataaggtttgactttgtgaccaatgcattgatacaagacataactagcaaagac
agtaaactattccacattaatgtttttgcttgcaaaaacattaccctcgaacgcttgaag
atagaggcacttggacgagagcccaaacacgatgggattcacatgggcaaatcgaggggt
caatattattgcctcgacattaaaactggtgatgattgtatttctatcggagatggcact
aaanaaatggtcataaaagaaataacttgtggaccgggacatggtataagtatcggtagt
cttggaaagttccaaaatgaagagccgnttgagggaatcaaaatctcaaatcgcaccatc
actaatactntgaatggagctcgaatcaaaacttggccangcgaacatggtggggcgaga
tcgtaaatacattttgaggatattaccatgaataatgtctctntccctatcctaattgat
caacaatattgcccatggaataaatgcaagaaaaatgaagaatccaaagttaaactaagc
aacattagcttcaagaacatccgtagcacatctgcgcttnncgaagctatcaagtttatt
tgcggcggttcttcgccatgtcaaaatgtggaacttgcagacattgatattaagcacaac
ggagtgaacnncgcaacatcccaatgtttgaatgtcaagcctataactagtggcaaatta
aacccgattccatgttccggccctgtcccaaaaacccctagcgccaccgcttaa
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