Gossypium arboreum (tree cotton): 108452854
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Entry
108452854 CDS
T05776
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A-like
KO
K12856
pre-mRNA-processing factor 8
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108452854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gab03041
]
108452854
Spliceosome [BR:
gab03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
108452854
Complex C
U5 SnRNP specific factors
108452854
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
108452854
NCBI-ProteinID:
XP_017606118
UniProt:
A0ABR0PVI4
LinkDB
All DBs
Position
5:9929924..9941038
Genome browser
AA seq
2354 aa
AA seq
DB search
MWNNNNNNAQIAPPGTGGFTIPPPPAAQPSYTVLAPHMTPQEAEAKLEEKARKWMQLNSK
RYGDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYKLL
ENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKR
MRFPPFDDEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVYAWFYDHKPLVKTKLINGPS
YRKWHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYR
DMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHTPMVMYIKTED
PDLPAFYYDPLIHPITTTNKERRENKIYDDEDEDDFVLPEGVEPLLSDTQLYTDTTAAGI
SLLFAPRPFNMRSGRMRRAEDIPLVSDWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHR
PPKAQKKKHLFRSLQATKFFQTTELDWVEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNF
NLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQLADGLQYTF
SHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLR
GIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIK
QNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIR
RGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKF
SPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIK
RHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKP
ADSEPPPLLVYKWCQGINNLQGIWDTSEGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLD
HNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIA
GPPQMPNEFITYWDTKVETRHPIRLYSRYIDRVHILFRFTHEEARDLIQRYLTEHPDPNN
ENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDN
PNLLFSMCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFE
NRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKI
GLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEE
DQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINT
LFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGV
EGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPT
INRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQEL
DALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAESKDMFDQKASNKYW
IDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNWFPG
SKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVD
DTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKT
AEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEK
FGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIV
TEPHHIWPSLTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQ
QRQQIAEIEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISAT
NLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQIAGYLYGISPPDNPQVKE
IRCIAMPPQWGTHQQVHLPSALPEHDFLNDLEPLGWLHTQPNELPQLSPQDVTSHARILE
NNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRINKDTGSNPHGYLPTHYEKVQM
LLSDRFLGFYMIPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYNEDHRPTHFLEFSNLE
EGETAEGDREDTFT
NT seq
7065 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacaacaataataacaacgctcagatagcgccgccggggaccgggggattcacc
atcccaccgcctccagctgcccagccttcgtacacagttctagctccgcatatgactccg
caggaagcagaggcgaagctggaggagaaggctcggaaatggatgcagcttaactctaaa
cggtatggggataagaggaaatttggttttgtcgagacgcagaaggaggatatgcctcct
gagcacgtcaggaagattatcagagaccatggggacatgtcctcaaaaaaatatcgccat
gataagcgtgtgtatcttggagcccttaaattcattcctcatgcagtttacaagctcctt
gagaatatgccaatgccttgggaacaggttcgagatgtgaaggttttgtaccatataaca
ggagcaataacgtttgtgaatgaaataccgtgggttgttgaaccaatctatttagcacag
tggggtacaatgtggatcatgatgcgaagggagaaaagagatcgtcgtcatttcaagaga
atgcggtttccaccatttgatgatgaggagcctccattagactatgctgataatctgtta
gatgttgatcctctagagccgattcagttagagctggatgaagaagaagattctgctgta
tacgcttggttttatgaccataagcctcttgtaaaaacaaagcttatcaatggtccgagt
tacaggaaatggcatctttctcttccaattatggccactttgcaccggcttgctggacaa
cttctttctgatttgattgaccgtaattatttttacttgtttgacatggagtcattcttc
acagctaaagcattaaacatgtgcatacctggtggtcctaagtttgaaccattataccgt
gatatggagaaaggggatgaggactggaatgaatttaatgacataaacaaactcattatc
cggtcacctcttaggacagagtatcgaattgctttccctcatctttataacaataggccc
aggaaagtaaagctttgtgtgtatcatactcccatggtcatgtacattaaaacagaagac
cctgatttaccggcattctattatgatcctttgatacaccccataactaccacaaacaag
gagcgacgagaaaataaaatttatgatgacgaggacgaagatgattttgtcttgcctgaa
ggggtggaacctttgctgagtgacacacagctttacactgatactactgctgctgggatt
tctcttttatttgctccacgcccttttaatatgagatctggtcggatgcgacgtgctgaa
gatataccacttgtgtcagactggtacaaggagcactgtcctccatcgtatcctgttaaa
gtgcgagtaagctatcagaaactgttgaaatgcttcgtgctgaatgagctgcatcacaga
ccaccaaaggctcagaagaagaagcacttgtttcggtctctccaggcgaccaagtttttt
caaacgacagagcttgattgggttgaagcaggtctacaagtttgcaagcaagggtacaac
atgctgaaccttttgatacataggaaaaatttgaactaccttcacctggattacaacttc
aacttgaaacctgtgaagactctcaccacaaaagagcgcaagaagtcacgatttggcaat
gcttttcatctttgtcgggagattctgcgtttaacaaagcttgtagttgatgccaatgtt
caatttcgacttggaaatgttgatgccttccaattggcagatggtctgcagtatactttt
tcccatgttggtcagttgactgggatgtaccgttacaagtaccggctcatgagacagatt
aggatgtgcaaagacttgaaacacttaatttattatcgcttcaacactgggccagtgggg
aaaggacctggatgtggattttgggcaccaatgtggagggtatggctctttttccttcgt
ggaattgtgcctcttctagaaaggtggttaggaaatctgcttgcacgtcaatttgaaggt
cgacattcaaagggagtggctaagactgttaccaagcaacgtgttgagagccactttgat
ctggaacttcgagctgctgtcatgcatgatgttcttgatgccatgccagagggcattaaa
caaaataaagctagaacaatattgcagcatctcagcgaggcatggcgctgttggaaggca
aacattccgtggaaggttccgggtttgccagttcccattgagaatatgatcctcagatat
gtcaagtctaaagctgactggtggacaaatgttgcgcattacaatcgtgagcgtatcaga
agaggtgcaactgttgataaaaccgtttgtaggaaaaacttaggcagattgacacgcctc
tggctaaaagctgagcaggaacgacagcacaattatttgaaagatgggccatatgtcacg
ccagaagaagccgttgccatttataccacaactgtgcattggttggaatcaagaaaattt
tcacccattccatttccccctttgtcttacaagcatgatacaaagctactcatccttgca
ctggaaaggttgaaggaatcttacagtgtagctgtgaggttaaaccaactccaaagagaa
gaactggggttaattgaacaggcttatgataatcctcatgaggccctatcaaggatcaag
cggcatctccttacgcaacgtgccttcaaagaagttgggatagagttcatggatttgtac
agctatttgattccagtgtatgaaattgagccccttgagaagattactgatgcttacctt
gaccaatacctatggtatgagggagacaagcgccacctatttcctaattggattaagcct
gcagattctgagccacccccgcttttggtttacaaatggtgtcaaggtataaacaatttg
caaggaatatgggacacaagtgaggggcagtgtgtggtgatgcttcagacaaaatttgag
aagttctttgagaaaattgatttgactatgttaaacaggcttttgcgtttggttcttgat
cacaacattgcagattatgtaactgcaaagaataatgtggtgttgtcttacaaagatatg
agtcacacgaattcatatggtcttatacgtggtcttcagtttgcttcttttgttgtccag
tattatggacttgttctggatctcttgcttcttggattgactcgtgctagtgagattgcc
ggtccaccccagatgccaaatgaattcatcacatactgggacacaaaagttgaaaccagg
catccaattcgtctgtactctaggtatattgatagggtgcacatattattcagattcaca
catgaagaggcacgagacctaatccagcgttatcttactgagcatcctgatccgaacaat
gaaaacatggttggatataacaacaagaaatgctggccaagagatgcaagaatgaggctt
atgaaacatgatgttaatcttgggagaagtgtcttctgggacatgaagaatcgtctacct
agaagcatcacaacgttggaatgggagaacagctttgtttctgtctatagcaaggataat
cccaacctgctttttagcatgtgtggttttgaagttcgaatacttcctaaaataagaatg
acccaagaagcatttagcaatacaagagatggggtttggaatttgcagaatgaacaaaca
aaagagcgaactgcagttgctttcttacgggttgatgatgagcacatgaaggtctttgag
aatcgtgtcaggcagattctcatgtcttctgggtcaacaacatttacaaagatagtcaat
aaatggaatactgctttaataggtcttatgacttacttccgtgaagcaaccgtacatacg
caagagcttctagatctgctagttaaatgtgaaaataaaattcaaactcgtatcaagatt
ggattgaattcaaaaatgcctagtcggttccctcctgtcattttttacactcctaaagaa
attggaggacttggcatgttatcaatgggacacatattgattccacagagtgaccttcga
tacagtcaacagactgatgttggtgtgactcactttaggagtggaatgagccatgaagag
gaccagctgatccctaatctttaccggtacatacagccatgggagagtgagttcatagac
tcacagcgtgtttgggccgagtatgctctgaagagacaggaagctcaagcacaaaatagg
cgcctaactcttgaggatttggaagattcgtgggataggggaataccacgtataaatact
ttgtttcagaaggataggcacacattagcatatgacaaaggatggcgagtacgcacagac
ttcaagcagtaccaggtgttgaagcagaatccattctggtggacccaccaaaggcatgat
ggcaaattgtggaacttgaacaactatcgaactgatgtcatccaagctctgggaggtgtt
gagggcattctagagcataccttgtttaaaggaacatacttccctacctgggagggtctt
ttttgggaaaaggcttctggattcgaggagtcaatgaagtataagaagcttactaatgct
cagagatctggtcttaaccagattcctaaccgtagatttactctctggtggtcacctaca
atcaatcgggctaatgtttacgtcggttttcaagtgcaactagatctcactggaatattc
atgcatgggaagatcccaaccttgaaaatatcgttgattcagatcttccgtgctcatttg
tggcaaaaaattcatgagagtgtagttatggatctttgccaagtgctagatcaggaattg
gacgctttggaaattgaaactgttcagaaggagacaattcatccaaggaagagttataag
atgaacagctcttgcgcagatattcttctctttgcagctcatagatggcctatgtcaaag
cctagtcttgtggcagagtccaaggacatgtttgatcaaaaagcaagcaataaatattgg
atagatgtacaacttcggtggggagattatgattcgcatgatattgagcgttacactcga
gccaaatttatggattatacaacagacaacatgtctatttatccatctcctactggggtg
atgattggacttgatctggcttacaacttgcattctgcgttcggtaactggttccctgga
tcaaagccactgcttgctcaggcaatgaataagatcatgaagtcaaatccggctttatat
gtcctaagggagcggataagaaaaggtttgcagttgtattcttctgagcctactgagcca
tatctttcatcccaaaattatggggagatcttcagcaaccagattatctggtttgttgac
gacaccaatgtttatcgtgtgacaatccataagacatttgaagggaatctcacaacaaag
cccattaatggtgccatcttcatatttaatcccaggactggacagttgttcctaaaggtc
attcacacaagcgtgtgggcaggtcaaaagcgtcttggtcagcttgctaagtggaaaact
gctgaagaagttgctgctctcgtgcggtctctgcctgttgaagaacaaccaaagcagatc
attgttactcggaagggaatgcttgatcctttggaggttcacttactggatttccctaac
atagttatcaagggaagtgagctgcaactaccattccaagcttgcttgaaaatagaaaaa
tttggtgatctgattcttaaggctacggaaccacaaatggttttgtttaacatctatgat
gactggttgaagagtatctcatcatacactgcattctcccgacttattctgatccttcgt
gcacttcatgtgaacaatgagaaggctaagatgttactgaaacctgacaagacaattgtt
actgagccacaccatatctggccttctctaactgatgatcagtggatgaaggttgaagtt
gctttaagagatctcatactctctgactatgccaaaaagaacaatgtgaacacgtcagcc
ctaacacagtccgagattcgtgacattattcttggagctgagattactccaccctctcaa
cagaggcaacaaatagcagagattgagaaacaggctaaggaagcaagtcagctgacagct
gtgacaactaggactacgaatgtgcatggtgatgagctcattgtcacgaccacaagtcct
tacgagcaagcagcatttgggtccaagactgactggcgtgttagagcaatatcagctact
aatctttatctccgtgtcaatcatatatatgtgaactcagaagacataaaggaaacgggg
tacacttacatcatgccaaagaacattttaaagaagttcatctgcatagcagatttgcgg
actcaaattgctgggtacttgtatggaataagccctcctgataatcctcaggttaaggaa
attcgctgtattgcaatgccaccacagtggggtactcatcagcaagttcatcttccatca
gctcttcctgaacatgatttcttgaatgatctggagcctttgggatggttgcacacacaa
ccaaatgagcttccccaattatcaccacaggatgtcacatcccatgctcggattttggag
aacaacaaacagtgggatggagagaagtgcattatcttgacttgcagtttcactccaggt
tcttgctcattaacagcgtacaagcttacacctagtggatatgagtggggacggataaac
aaagatacaggaagcaatcctcatggctaccttccaactcattacgagaaggtgcagatg
ctcttaagtgataggttccttgggttttatatgatccctgacaatggtccatggaattac
aatttcatgggagtgaagcatacagttagcatgaaatatggggtgaagctagggacacct
agagaatactacaacgaggaccacaggccgactcatttccttgagttcagcaacttggag
gaaggtgagactgcagaaggagatcgggaggatacattcacctaa
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integrated database retrieval system
