Gossypium arboreum (tree cotton): 108452984
Help
Entry
108452984 CDS
T05776
Name
(RefSeq) uncharacterized protein LOC108452984 isoform X1
KO
K06100
symplekin
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108452984
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gab03021
]
108452984
03019 Messenger RNA biogenesis [BR:
gab03019
]
108452984
Transcription machinery [BR:
gab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108452984
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
108452984
U7-dependent histone pre-mRNA processing factors
108452984
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
CRM1_C
Motif
Other DBs
NCBI-GeneID:
108452984
NCBI-ProteinID:
XP_017606319
UniProt:
A0ABR0R2J3
LinkDB
All DBs
Position
1:complement(84901400..84924464)
Genome browser
AA seq
1337 aa
AA seq
DB search
MNVADSRDQALSLLTAALNHSDLAVKLSSLKQAKDILSSLDSSSAAELFPYLSDLQRSPH
SLVRGFLVEIIEDIGLKSIEHSTVLVPVLVTFLRDVDSNVVKQSIVCGINFFCSVLEELT
LQFQQHGKVDQWLQELWMWMVRFKEGVFSIALQPGPVGIKLLALKFLEMHVLLFTSDNVN
SEKYIEATRGSRRTFNISWLSGGHPILDPVAVTSDANRTLYILLDMLQSASSLPGSVTIT
VVNCLAAIARRRPLHYGTVLSALLDFNPNFDMVRECHKASIQYSLRTAFLGFLRCTNPAI
VESRDRLLRALRAMNAGDAADQVIRQVEKMIKNSERASREIQSVRDDQASSQAYVLGDVS
KKRSMPQDNEEPIHNFEMASKRIRSGPNSHSMPPTQINDSGQDFSSVNGGSPSFPLSDDN
LTPVEQMIAMIGALLAEGERGAESLEILISKIHPDLLADIVITNMRHLPKSPPSLTKVGT
LPTTQQAVHVNSRAQVLPPPASTNSLHTPVSTPQLPFTSAATISSSISDTSAVNNFAADS
KRDPRRDPRRLDPRRAAVSVGMSCSPVLEGTGAAMPDFDCSISSKPLSVPAVENPSLRPM
SNIQSNDNTIEGPSITSVEQPAPEGDVVGGAEDIVNILEVKTSSNHAVSPYVVDVDSTEM
KADVEIKHETEESSFPESDQNFQASITVFSLDETGRDLPVPPPYVELTEELERSVIKSAV
QQIAESYLHLHWSDCNEMRMALLARLVGQIDADDDIFVMLGKQIVVDYRQQKGHDIVLQV
LYHLYSLTVSDSLDNSSYSAVLYEKFLLAVSKSLLDTLPASDKSFSRLLGEVPFLPDSAL
KLLDDLCSSDVFDVAGKEVRDAERVTQGLGVVWSLILGRPNNRQACLGIALKCAVHSQDD
IRGKAIRLVANKLYQLSYISREIEQFATNMLLSAVDQRTAGAESLKSGSIDERGDKEVGS
GDTSTSGSLLSEPRTSGIDSSNAESTSNSASVVSFPEAQRLISLFFALCTKKPSLLQLSF
DIYGRAPKIVKQAFHRHIPIVIRALGQSDSQLLQIISDPPPGSENLLTLVLQILTQETTP
SPDLVATVKHLYETKLKDATILIPMLSSLSKNEVLPIFPRLVDLPLEKFQLALAHILQGS
AHTGPALTPAEVLVAIHDIAPDKGGPPLKKITDACSACFEQRTVFTQQVLAKALNQMVDQ
IPLPLLFMRTVIQAIDAFPTLVDFVMEILSKLVSKQIWRMPKLWVGFLKCVVQTQPHSFP
VLLQLPPPQLESTLNKYGSLRSSLAAYASQPTIKGSLPRATLAVLGLANESHMQQQQPHL
SNLHSSDTSSVQGATST
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
atgaacgttgctgattctagggaccaagccctttctctgctcactgccgcgctcaaccac
tctgatttggcggtgaagctttcgtctcttaaacaggccaaggacattctttcctctctc
gattcttcttccgccgccgaactcttcccctacctttccgacctccagcgttctcctcat
agcctcgttaggggatttcttgtcgagataattgaagatattggattaaaatcaatagag
cattcgactgtacttgtaccggttttagtaacgtttttgagggatgttgactccaatgtt
gtgaaacaatccattgtttgtggcataaatttcttctgcagtgttttggaagaactgaca
ttacagtttcagcagcacggtaaagttgatcagtggcttcaagaactatggatgtggatg
gttagattcaaggaaggtgtgttttccattgcattgcagcctggtccagttgggataaag
ttgctggctctgaaatttttggagatgcatgtcttactttttacatctgacaacgttaac
tctgaaaaatacattgaagctaccagaggaagtagacggacttttaatatatcatggcta
agtgggggtcatcctattttggatccagttgctgtaacatcagatgcaaacaggacactt
tatattttacttgacatgttgcaatcagccagtagtctccctgggtctgtaacaatcact
gttgtcaattgtcttgctgccatagcaagaaggagacccctccactatggcactgttctt
tctgcactgctcgattttaatccaaactttgacatggtgagggaatgccataaagctagt
attcaatactccctgagaactgcgtttttgggattcctgaggtgtactaatccagctatt
gtagagtctagggacagattgcttagagctctacgagcaatgaacgcaggggatgctgct
gatcaagtcatcagacaggttgagaagatgataaaaaatagtgagcgggcttcaagggaa
attcagtctgtcagggatgatcaagcatcaagccaagcatatgttttaggggatgtgtca
aagaaaagatctatgcctcaggataatgaagaaccaatacataattttgagatggcgtca
aagcgtattcgctctggacccaattcccactcaatgccacccactcaaataaatgattct
gggcaagatttttcttctgtcaatggaggatctcccagttttcctctttcagatgataat
ttaactcctgttgagcaaatgatagcaatgattggtgctttacttgctgaaggagaaaga
ggtgctgaatctcttgagattcttatttcaaaaattcatcctgacctgctggcagatatt
gtcatcacaaatatgaggcacttgcctaaaagtcctccttcattaacaaaggtcgggaca
ttgcctacaactcagcaagctgtacatgtaaatagtcgggcccaagttctgccacctcct
gcttcaacaaattccttgcacacacctgtttcaacaccacagttgccctttacttcagct
gctacaatcagttcatcaatatccgatacatctgctgtcaacaattttgctgcagattct
aaacgcgacccaagaagggatcctcgtcgtctagatccacgacgggctgctgtttctgtt
ggaatgtcatgctcacctgttctggagggcactggtgctgcaatgcctgactttgattgt
tctatttctagtaagcctctttcagttccagctgttgagaacccttctttgcgcccgatg
tctaacattcaaagcaatgataacacaatagaaggtccatcaattactagtgttgagcaa
ccagctcctgaaggggatgttgtgggtggtgcggaagacattgttaacattctagaagtc
aagacttcctccaatcatgcagtttctccttatgtggttgatgtagattcaactgaaatg
aaggcagacgttgaaattaaacatgagactgaagaatcatcttttccagagtctgatcag
aatttccaggcttctattactgtattttctttagatgagactggtcgggatttacctgtg
ccacctccatatgttgagctaactgaggagctggaaagaagtgtgataaaatcagcagtt
caacagatcgctgagtcatacctgcatcttcattggtcagattgtaatgaaatgcgcatg
gcgttacttgcgcggcttgttggtcagattgatgctgatgatgacatttttgtcatgttg
ggaaaacaaattgttgtggattaccgacaacaaaagggtcacgacattgtattgcaagtt
ctctaccatctatattctctcacagtttcagattcacttgacaactcttcatattctgct
gttctttatgaaaaattcctcctggcagtgtccaaatctttgctggacacacttccagcc
tcagacaagtcatttagtaggcttcttggtgaagttccgtttctgcctgactcagccttg
aaacttttagatgatctctgctcttctgatgtgtttgatgttgctgggaaagaggttcgt
gacgctgagcgtgtgacacagggcctaggtgtggtgtggagtttaattttgggacgtcca
aataatcggcaagcctgcttaggtatagcattgaagtgtgctgttcattctcaagatgac
attcgtgggaaagctatccggctggtagcaaacaaactttatcagctgagctacatttca
agggaaattgagcaatttgcaacaaatatgttgctgtctgctgtagatcagagaacggca
ggtgcagagtctttgaagtctgggtctattgatgaaagaggcgacaaggaggttggaagt
ggggacacatctactagtggctctctactttcagagccccgaacttctggaattgactcc
tccaatgcagaatcaacaagtaatagtgcttcagtagtgtcatttcctgaagcccaaaga
ctcatttctctgttttttgccttatgcactaagaagcctagtcttcttcaactctcattt
gatatttatgggcgagcgccaaaaattgtaaagcaggcttttcatcgccatatacctatt
gtaataagagccttaggtcagtctgattctcagttgcttcaaataatatccgacccaccc
ccaggaagtgaaaatcttttgacactggtgctgcaaatactgacccaagagacaactcct
tctcctgatttagttgccactgtgaagcatttatatgagactaagctgaaggatgctacc
atccttattccaatgttatcttcactttccaagaacgaggtgttacctattttccctcgg
cttgttgaccttccactggaaaagttccagcttgcgcttgctcacatattgcagggttca
gctcacactggtcctgccttgactcctgccgaagtgttggtagccatccatgacatcgct
cctgataaaggtggtcctccactgaaaaagataacagatgcttgctcagcttgttttgag
cagcgcacggttttcacacagcaggtcttagcaaaggccttgaatcagatggttgatcag
atccctcttccgttacttttcatgagaacagttattcaggcaattgatgcttttcctacc
ctggttgattttgtcatggaaatcctatccaaacttgtgagtaaacagatctggagaatg
ccgaaattgtgggttggattcttgaagtgtgtggttcagacacaacctcattcctttcct
gttttattacagttgcctccgccacagcttgaaagtacactgaataaatatggtagtctc
agaagttcccttgctgcttatgcaagccagccaactataaaaggttcactgcctagagca
acgcttgcggttctcggtcttgcaaatgagtcgcatatgcagcagcagcaaccacatctg
tcaaacttgcattcttcggacacttcttcagttcagggggcaacatcaacataa
DBGET
integrated database retrieval system
