KEGG   Gossypium arboreum (tree cotton): 108453027
Entry
108453027         CDS       T05776                                 
Name
(RefSeq) protein VACUOLELESS1
  KO
K20180  vacuolar protein sorting-associated protein 16
Organism
gab  Gossypium arboreum (tree cotton)
Pathway
gab04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:gab00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    108453027
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:gab04131]
    108453027
Membrane trafficking [BR:gab04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    108453027
   Hops complex
    108453027
SSDB
Motif
Pfam: Vps16_N Vps16_C WD40_WDHD1_1st ANAPC4_WD40 Beta-prop_THOC3
Other DBs
NCBI-GeneID: 108453027
NCBI-ProteinID: XP_017606396
LinkDB
Position
7:14872595..14882091
AA seq 844 aa
MANVSVAAEWQLLYNRYYRKPELYPLRWKNIDLSRNKVACAPFGGPIAVIRDDSKIVQLY
SESALRKLRIFTSSGVLISDTVWKNPGGRLIGMSWTEDQTLICIVQDGTVYRYNIHAELI
EPNVTLGKECFEQNVVECIFWGNGVVCLTEGGLLFCIPDFKVMRPCQLAETGTEDLPNCM
AVIEPKYTVSGNVEVLVGVGDGILIVDEDGVQRVDGEAVQGPVQKMVVSWDGKYLAIFTH
DGRILVTDINFKGVLLEYNCESALPPEQLAWCGLDSVLLYWDDTPLLMVGPRGDPVHYFY
DEPLLLIPECDGVRILSNTSLEFLQRVPDSTVSIFKIGSTSPAALLYDALDHFDRRSAKA
DENLRLIQSSLPEAVEACIDAAGHEFDVSRQRTLLRAASYGQAFCSTFQRDRIQEMCKTL
RVLNAVRDPEIGIPLSINQYKLLTPSVLIARLINAHRHLLALRISEYVGMNQEVVIMHWA
CSKITASLAIPDATLLEILLDKLKLCRGISYAAVAAHADKNGRRKLAAMLVEHEPRSSKQ
VPLLLSIGEEDTALMKATESGDTDLVYLVLFHIWQKRPPLEFFGMIQARPLPRDLFISYA
RCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASKGSPLHGPRIKLIDKAQHLFA
ETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKVKT
EFKVSEKRWYWLKVFALATIRDWEALEKFSKEKRPPIGYRPFVEACIDADEKGEALKYIP
KLADLRERAEAYARIGMAKEAADAASQAKDGELLGRLKLTFAQNAAASSLFDTLRDRLSF
QGVS
NT seq 2535 nt   +upstreamnt  +downstreamnt
atggccaatgtttcagtagctgcagaatggcagctcctctataaccgctactaccgcaag
cccgagctctaccctttgagatggaaaaacattgacttatcccgcaacaaggtcgcctgt
gctcccttcggtggcccgatcgccgtcatccgcgacgattccaagatcgtccagctctat
tccgaatcagctctccggaagcttcgcatcttcacttcctccggcgtcctgatctccgat
accgtatggaaaaaccccggcggtcgtctcatcggcatgtcctggaccgaagaccaaacc
ctaatctgcatcgtccaagacggcaccgtttaccgctacaacatccacgccgagctgatc
gaacccaacgtaacgctcggaaaagagtgtttcgagcaaaacgtggtggaatgcattttt
tggggaaacggcgttgtgtgcttgaccgaaggagggttgttgttttgcatccccgatttt
aaggtgatgcgtccctgccagcttgcggagacggggacggaggatttgcccaattgcatg
gcggttatcgagccaaaatacacggtttcggggaatgtggaagtgttggtcggcgttggt
gatggtattttgattgtggatgaagatggagtacagagagtggatggggaagcggttcag
ggtccggttcagaaaatggttgtttcttgggatggcaaatatttggccatttttacgcat
gatgggcggattttggtgacggatattaatttcaagggagttttgttggagtataattgt
gagtcagctcttcctccagagcagctagcttggtgtggactggatagtgtacttctatat
tgggatgatacaccattgttgatggtgggccctcggggagatccagtgcattacttttac
gatgagccactgcttttgatcccagagtgtgatggagtgaggattttatcgaacacaagt
ttggagtttctgcaacgggttccagattctactgtatctatattcaaaattggtagcaca
tcaccagctgcattgctttatgatgccttggatcattttgaccggagaagtgccaaggca
gatgaaaatttgagattgattcagtcatccttgcctgaggctgttgaagcctgcattgat
gctgctggtcatgaatttgatgtttcacgtcaaagaactctattaagagctgcaagctat
ggacaagctttctgcagtacttttcaacgtgatcgcattcaggagatgtgtaaaaccttg
cgggtcttaaatgctgtgcgtgatcctgagattggcatccctctcagtattaatcaatat
aagttgcttacaccatctgtgctgattgctcgtttgattaatgcccatcgccaccttctt
gcactacggatatcagagtatgttggaatgaatcaagaggtggtgataatgcattgggca
tgctcgaagataacagcttcattagcaattccagatgccactctcttagaaattctcctt
gataagctaaaattatgcagagggatatcatatgcagcagttgctgctcatgcagataag
aatggccggcgaaagttagctgctatgcttgttgagcatgaacctcgctcctctaaacag
gtgccgcttctgttaagcataggagaagaagatactgctttgatgaaggcaacagaaagc
ggtgacactgaccttgtctatcttgttcttttccatatctggcaaaagaggccacctttg
gagttctttggaatgattcaggctagacccctaccacgtgatttgtttatatcttatgca
aggtgctataagcatgaatttttgaaagatttctttctttcgactggacaacttcaagaa
gttgcatttcttttgtggaaggagtcatgggaacttggaaaaaatccaatggcaagcaaa
ggatccccgcttcatggtccacgcataaaactaattgacaaggcccagcatctttttgca
gaaaccaaggaacatacctttgagtccaaggctgctgaggagcatgcaaagttgttgaga
atacaacatgagttagaagtaagtacaaagcaggccatatttgttgattcaagtatcagt
gatactatacgtacatgtattgttctggggaatcatcgtgctgcaatgaaagtgaagacc
gagttcaaggtttctgagaagaggtggtattggcttaaagtttttgctttggctacaatt
agagattgggaggctcttgagaagttctcaaaagagaagagaccaccaattggctatagg
ccatttgttgaggcatgcattgatgctgatgagaaaggtgaagctctaaaatatataccc
aagcttgctgatctccgtgaaagggccgaggcatatgctaggattggcatggccaaagaa
gctgctgatgcagcttctcaagcaaaagatggtgaattgctgggtagattgaaattaaca
tttgcacaaaatgcagcagcttcctcactttttgacactcttcgggatcgattgtcattc
caaggtgtttcatag

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