Gossypium arboreum (tree cotton): 108453027
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Entry
108453027 CDS
T05776
Name
(RefSeq) protein VACUOLELESS1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
108453027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gab04131
]
108453027
Membrane trafficking [BR:
gab04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
108453027
Hops complex
108453027
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Ortholog
Paralog
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
WD40_WDHD1_1st
ANAPC4_WD40
Beta-prop_THOC3
Motif
Other DBs
NCBI-GeneID:
108453027
NCBI-ProteinID:
XP_017606396
LinkDB
All DBs
Position
7:14872595..14882091
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AA seq
844 aa
AA seq
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MANVSVAAEWQLLYNRYYRKPELYPLRWKNIDLSRNKVACAPFGGPIAVIRDDSKIVQLY
SESALRKLRIFTSSGVLISDTVWKNPGGRLIGMSWTEDQTLICIVQDGTVYRYNIHAELI
EPNVTLGKECFEQNVVECIFWGNGVVCLTEGGLLFCIPDFKVMRPCQLAETGTEDLPNCM
AVIEPKYTVSGNVEVLVGVGDGILIVDEDGVQRVDGEAVQGPVQKMVVSWDGKYLAIFTH
DGRILVTDINFKGVLLEYNCESALPPEQLAWCGLDSVLLYWDDTPLLMVGPRGDPVHYFY
DEPLLLIPECDGVRILSNTSLEFLQRVPDSTVSIFKIGSTSPAALLYDALDHFDRRSAKA
DENLRLIQSSLPEAVEACIDAAGHEFDVSRQRTLLRAASYGQAFCSTFQRDRIQEMCKTL
RVLNAVRDPEIGIPLSINQYKLLTPSVLIARLINAHRHLLALRISEYVGMNQEVVIMHWA
CSKITASLAIPDATLLEILLDKLKLCRGISYAAVAAHADKNGRRKLAAMLVEHEPRSSKQ
VPLLLSIGEEDTALMKATESGDTDLVYLVLFHIWQKRPPLEFFGMIQARPLPRDLFISYA
RCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASKGSPLHGPRIKLIDKAQHLFA
ETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKVKT
EFKVSEKRWYWLKVFALATIRDWEALEKFSKEKRPPIGYRPFVEACIDADEKGEALKYIP
KLADLRERAEAYARIGMAKEAADAASQAKDGELLGRLKLTFAQNAAASSLFDTLRDRLSF
QGVS
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atggccaatgtttcagtagctgcagaatggcagctcctctataaccgctactaccgcaag
cccgagctctaccctttgagatggaaaaacattgacttatcccgcaacaaggtcgcctgt
gctcccttcggtggcccgatcgccgtcatccgcgacgattccaagatcgtccagctctat
tccgaatcagctctccggaagcttcgcatcttcacttcctccggcgtcctgatctccgat
accgtatggaaaaaccccggcggtcgtctcatcggcatgtcctggaccgaagaccaaacc
ctaatctgcatcgtccaagacggcaccgtttaccgctacaacatccacgccgagctgatc
gaacccaacgtaacgctcggaaaagagtgtttcgagcaaaacgtggtggaatgcattttt
tggggaaacggcgttgtgtgcttgaccgaaggagggttgttgttttgcatccccgatttt
aaggtgatgcgtccctgccagcttgcggagacggggacggaggatttgcccaattgcatg
gcggttatcgagccaaaatacacggtttcggggaatgtggaagtgttggtcggcgttggt
gatggtattttgattgtggatgaagatggagtacagagagtggatggggaagcggttcag
ggtccggttcagaaaatggttgtttcttgggatggcaaatatttggccatttttacgcat
gatgggcggattttggtgacggatattaatttcaagggagttttgttggagtataattgt
gagtcagctcttcctccagagcagctagcttggtgtggactggatagtgtacttctatat
tgggatgatacaccattgttgatggtgggccctcggggagatccagtgcattacttttac
gatgagccactgcttttgatcccagagtgtgatggagtgaggattttatcgaacacaagt
ttggagtttctgcaacgggttccagattctactgtatctatattcaaaattggtagcaca
tcaccagctgcattgctttatgatgccttggatcattttgaccggagaagtgccaaggca
gatgaaaatttgagattgattcagtcatccttgcctgaggctgttgaagcctgcattgat
gctgctggtcatgaatttgatgtttcacgtcaaagaactctattaagagctgcaagctat
ggacaagctttctgcagtacttttcaacgtgatcgcattcaggagatgtgtaaaaccttg
cgggtcttaaatgctgtgcgtgatcctgagattggcatccctctcagtattaatcaatat
aagttgcttacaccatctgtgctgattgctcgtttgattaatgcccatcgccaccttctt
gcactacggatatcagagtatgttggaatgaatcaagaggtggtgataatgcattgggca
tgctcgaagataacagcttcattagcaattccagatgccactctcttagaaattctcctt
gataagctaaaattatgcagagggatatcatatgcagcagttgctgctcatgcagataag
aatggccggcgaaagttagctgctatgcttgttgagcatgaacctcgctcctctaaacag
gtgccgcttctgttaagcataggagaagaagatactgctttgatgaaggcaacagaaagc
ggtgacactgaccttgtctatcttgttcttttccatatctggcaaaagaggccacctttg
gagttctttggaatgattcaggctagacccctaccacgtgatttgtttatatcttatgca
aggtgctataagcatgaatttttgaaagatttctttctttcgactggacaacttcaagaa
gttgcatttcttttgtggaaggagtcatgggaacttggaaaaaatccaatggcaagcaaa
ggatccccgcttcatggtccacgcataaaactaattgacaaggcccagcatctttttgca
gaaaccaaggaacatacctttgagtccaaggctgctgaggagcatgcaaagttgttgaga
atacaacatgagttagaagtaagtacaaagcaggccatatttgttgattcaagtatcagt
gatactatacgtacatgtattgttctggggaatcatcgtgctgcaatgaaagtgaagacc
gagttcaaggtttctgagaagaggtggtattggcttaaagtttttgctttggctacaatt
agagattgggaggctcttgagaagttctcaaaagagaagagaccaccaattggctatagg
ccatttgttgaggcatgcattgatgctgatgagaaaggtgaagctctaaaatatataccc
aagcttgctgatctccgtgaaagggccgaggcatatgctaggattggcatggccaaagaa
gctgctgatgcagcttctcaagcaaaagatggtgaattgctgggtagattgaaattaaca
tttgcacaaaatgcagcagcttcctcactttttgacactcttcgggatcgattgtcattc
caaggtgtttcatag
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