Gossypium arboreum (tree cotton): 108453105
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Entry
108453105 CDS
T05776
Name
(RefSeq) endoribonuclease Dicer homolog 2-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gab03036
]
108453105
Chromosome and associated proteins [BR:
gab03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
108453105
microRNA pathway
RISC loading complex
108453105
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Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
PAZ
dsrm
TFCD_C
Motif
Other DBs
NCBI-GeneID:
108453105
NCBI-ProteinID:
XP_017606520
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All DBs
Position
5:84742345..84746235
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AA seq
721 aa
AA seq
DB search
MTKYYCYLMELKQNFDYEVPVQNIMLLVRNQFDMDEKSMNIELEVDRGTLTVNMKYIGLK
CLNSDQVILCRRFQLAVFQVLMDRKAEKLAEVLCDHTLGNNSEIDYLLLPSNYVGQSPLI
DWLSVTSVTFSYEKACKNHVNCNADILIQIKSGLVCTCMIQNSLVTTPHNGHAYIISGLL
TNINANSLLRLSDGRLMTYKEYYEKRHGINLCYSQVSFLAGRQIFRVQNHIQRRRKQKER
ESSNPFVELPPELCCVVMSPISISTFYSFTFLPLIMHRLESLLLATSLKKMHLNHCVQNV
AIPTMKVLEAITTKKCLENFHLESLETLGDSFLKYAVCQQLFKKYQNHHEGLLSIRKEKF
ISNTALSMLGCDKKLPGFIRDEPFDPKDWMIPGYNCGSYSLNEETLCNAKKIYVRGTRKL
KFKKVADVVEALIGAYLSTGGEAAGLLFLDWIGISINFTNIPYERHFKVRAEKFVNVQHF
ESLLHYSFQDPSLLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLITLHLYNKYPGLTP
GLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKEIKETVESFQELSLEYTFGWES
EKSFPKVLGDVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITPETLKVHPVKELYELCQ
KQHYELRTPIVSHEDGMSSITIEVEANGKVFKHTSTVCDKKMAKKVASKEVLKSLKGASC
S
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagtactactgctacttaatggagttgaagcagaactttgattatgaggttcct
gttcagaacatcatgcttcttgtcaggaatcagtttgacatggatgaaaaaagtatgaat
attgagttagaagttgacaggggcacattaacagttaacatgaaatatattggactaaaa
tgtcttaattctgaccaggttatcttatgtagaaggtttcagcttgcagtttttcaagta
cttatggatcgtaaagctgaaaagttggcagaggtgttatgtgaccataccttggggaat
aattctgaaattgattatctactcctcccatcaaattatgtgggccagagtcctctaatt
gattggttgtcagttacttctgtcacattttcttatgaaaaggcctgcaagaatcatgtg
aactgcaatgctgatatattgatacagatcaaaagcggtctggtgtgcacttgcatgatc
caaaattcgttggtcactactcctcataatggtcatgcttatattatcagtggtctttta
actaatataaatgcaaattcacttttgaggttgagtgatggacgcttaatgacttacaag
gaatattatgaaaaacgccacggtatcaatttatgttatagtcaagtctctttccttgct
gggcgacagattttccgggtgcaaaatcacattcaaaggcgcagaaaacagaaagagaga
gaatcaagtaacccattcgtagaattgcctcctgagctttgttgtgtagtaatgtctccc
atatcgatcagcacattttattctttcacatttcttccgttaatcatgcatcgactcgag
tctttgctccttgctaccagcttgaaaaagatgcatttgaatcattgcgtgcaaaatgtt
gcgattccaaccatgaaggttttggaggcaattactaccaaaaagtgcctagaaaacttt
catttggaatcactagagactcttggtgactcttttttgaagtatgctgtttgtcaacag
cttttcaaaaaatatcaaaatcatcacgagggccttcttagtattaggaaggaaaaattt
atttcaaatacagctctgtccatgctaggatgtgacaagaaacttccggggtttatccgt
gatgagcctttcgatcccaaagactggatgattcctggttataattgtggaagttactca
ttaaatgaggaaacactgtgtaatgcaaaaaaaatatatgttagaggaacaagaaagctg
aagtttaagaaggttgctgatgttgttgaggcacttattggtgcataccttagcacggga
ggcgaagcagctggattactatttttggattggatcggtataagtattaatttcacaaat
ataccatatgaaagacattttaaagtgcgggccgagaagtttgttaatgtccagcacttt
gagtcccttctacactattcattccaagacccttctttgttggtggaagcattaacccat
ggttcttatatgctagctgaaattccaggatgttatcagcggctggaatttctaggggac
tccgttttagattatcttattactctgcatttatataataaatatcctgggctcacgcca
ggattattaacggatcttaggtcagcatctgttaacaacaattgctatgcattatcagct
gtaaaggctggatttcataagcacattctccaaagttcacagaagctttacaaggaaata
aaagaaaccgtcgaaagttttcaggaattatcgttggaatacactttcggctgggaatct
gaaaaatctttccccaaggtactcggtgacgtgatggagtcacttgctggagctattttt
gttgattcaggatacaataaggaaatcgtattccagagtataaggccactgttggagccc
atgattactccggagactctgaaggttcaccctgtcaaagagctatatgagctctgtcaa
aagcagcattatgaactaagaacacccattgtttcacatgaggatggcatgtcttctatt
acgatagaggttgaagcaaatgggaaggtattcaagcacacatccacagtttgtgataag
aagatggccaagaaagtggcttccaaagaagttttgaagtctctaaagggagccagttgt
agctag
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