Gossypium arboreum (tree cotton): 108453130
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Entry
108453130 CDS
T05776
Name
(RefSeq) uncharacterized protein LOC108453130
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108453130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108453130
03041 Spliceosome [BR:
gab03041
]
108453130
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
108453130
Spliceosome [BR:
gab03041
]
Complex B
Other components
Prp19-related factors
108453130
Complex C
108453130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
ARM_TT21_C
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
108453130
NCBI-ProteinID:
XP_017606555
UniProt:
A0A0B0P9F3
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All DBs
Position
5:complement(14329351..14334134)
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AA seq
915 aa
AA seq
DB search
MSLPKELYPSQDDLLYEEELLRNPFSLKLWWRYLIARSDAPFKKRFIIYERALKALPGSY
KLWHAYLRERLEIVRNLPVTHPQYETLNNTFERALVTMHKMPRIWIMYLSTLTEQKLITK
TRRAFDRALCALPVTQHDRIWEPYLVFVSQRGIPIETSLRVYRRYLKYDPSHIEDFIEFL
VNSNLWQEAAERLASVLNDGQFYSIKGKTKHRLWLELCDLLTTHATEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRNLFEKARDIFEEGMTTVVTVRDFSVIFDAYSQFEESMV
ALKMENMDLSDEEEEEEEEEEDEEDIRLDIALCKSKSKFEKKIFKGFWLHDDKDVDLRLA
RLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTIDPMKAVG
KPHTLWVAFAKLYETYKDLANARVIFDKAVQVNYKTVDHLASIWAEWAEMELRHKNFKGA
LELMRRATAEPSVEVKRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGTLESTRAVYER
ILDLRIATPQIIINYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYG
KSKLERARELFEHAVETAPADLVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVSNHEKL
GMYEIYIARAAEIFGVPKTREIYEQAIQSGLPDKDVKTMCLKYAELEKSLGEIDRARAIY
VFASQFADPRSDADFWDKWREFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQK
DQNIDEAKDKMKQAGISEDEMAALERQILPAADNAIAKDNSRKVGFVSAGVESQADGGLK
TTANLEDIDLPDESDSDEEKVEIAQKDVPSAVFGGIRKREDGNDIQDGDDASAAKEKGGK
SLLGALERIKRQKQA
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgccaaaggaactatacccatctcaagatgaccttctttacgaagaagaactg
ttaagaaacccctttagtttgaaactctggtggaggtatttaatagctagatcagatgcc
cctttcaagaaaagatttataatctacgagcgagccttgaaagctttgcctggtagttac
aagctttggcatgcttatttacgtgaacgtctcgagattgttcgcaatttacctgttact
caccctcaatatgaaacccttaacaatacttttgagagggcgcttgttacaatgcataag
atgcctaggatttggataatgtacttgtcgacgttaactgaacagaaattgattactaag
acacgtagggcgttcgatagagcactgtgtgcgttgcctgtgactcaacatgataggatt
tgggaaccttatttggtttttgtgagtcaaaggggtatccccattgagacatcgcttagg
gtttataggagatatttgaagtatgatcctagtcatattgaggatttcattgagtttttg
gtgaattcaaatctgtggcaagaagcagcagagaggttagcgtctgttttgaatgacggt
cagttttattcgataaagggtaaaactaagcatcggttgtggttagagttgtgtgatttg
ctcacaacacatgcgacagaggtttcagggcttaatgtggatgcgataatcagaggtgga
attagaaaatttacggatgaagttgggagactttggacttcacttgctgattattatatc
agaagaaatctgttcgagaaggcgagggatatttttgaggagggaatgacaactgtggtt
actgtgagggatttcagtgtcatatttgacgcttattcacaatttgaagagagtatggtt
gcccttaaaatggagaacatggatttgagtgatgaggaagaagaagaggaagaggaagag
gaggacgaagaagacatccgtttggacattgctctgtgcaaatcaaaatccaagtttgag
aagaagatatttaaggggttttggttgcatgatgataaggatgttgatttgaggttggct
cggttagagcatttaatgaatagaaggccggaattggctaacagtgtccttttacggcag
aatccacataatgtggagcaatggcaccgtagggtcaagttatttgagggaaatcccacc
aagcaaatattgacatacacagaggcagttaggacgattgacccaatgaaagctgttgga
aagccccatactctatgggtggcttttgcaaagctttatgagacatataaagatctggcg
aatgctcgtgtcatttttgataaagctgtccaagtaaattacaagactgttgatcacctg
gcaagtatatgggctgagtgggcagagatggagctgaggcacaagaatttcaaaggtgca
ttggagctgatgagacgtgctacagctgagccttctgttgaagtcaaacgaagagtggct
gctgatgggaatgaacctgttcagatgaagctacataaatccttgaggctctggacattc
tatgtggacttggaagagagtctgggtacactggagtcaactcgagcggtctatgagaga
atacttgatttaagaattgctacgccacaaattataataaactatgcatttttattagag
gagaacaaatattttgaagatgctttcaaagtgtacgaaagaggggtcaagatattcaag
tatccacatgtgaaggatatatgggtcacttatctgtcgaagtttgtaaagagatatggg
aaatcaaaactggaacgagcaagggagctgtttgagcatgctgttgaaacagcacctgct
gatttagtaaaacccctgtatcttcaatatgcaaagctggaggaggattatgggctagca
aaacgagctatgaaggtctacgatcaagcgactaaggctgtttcaaatcatgagaagctt
ggcatgtatgagatttacattgcccgtgcagctgagatctttggtgttccaaaaacaaga
gaaatttatgagcaggcaatacagtctggccttccagataaagatgtgaagacaatgtgt
ttaaaatatgcagagttagaaaaaagcttaggagaaattgatcgtgctcgagcaatatat
gtatttgcatctcagtttgctgatccacgctctgatgcagatttttgggataaatggagg
gagtttgaggtgcaacatggtaatgaagataccttcagagaaatgttgcgtattaaacgg
agtgtctctgcaagttatagccagacacacttcattctccctgagtatctgatgcagaag
gatcagaacatcgatgaagctaaggacaaaatgaaacaggctggtatctctgaggatgaa
atggctgctcttgaaaggcagatactacctgcggctgataatgctattgccaaagacaac
tctaggaaagtagggtttgtgagtgctggagttgagtcacaagccgatggtgggttgaaa
acaacagcaaatctcgaagacattgatttgccagatgaaagtgattcggatgaagaaaaa
gttgaaattgcacaaaaggatgtcccgtctgccgtgtttggaggtattcggaagagggaa
gatggcaatgacattcaggatggagatgatgcctcggctgccaaagaaaaaggcggtaag
agcctactgggtgcacttgagcgaattaaaaggcagaaacaagcctag
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