Gossypium arboreum (tree cotton): 108453138
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Entry
108453138 CDS
T05776
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108453138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108453138
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
108453138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_14
TPR_16
TPR_17
TPR_8
TPR_19
TPR_CcmH_CycH
TPR_9
TPR_12
TPR_6
TPR_20
TPR_7
DUF6584
BTAD
Motif
Other DBs
NCBI-GeneID:
108453138
NCBI-ProteinID:
XP_017606565
LinkDB
All DBs
Position
5:15398042..15407163
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AA seq
1176 aa
AA seq
DB search
MKTTGELEGEERRRLEELVENNPDDSSLHFQLGVCLWETQSEKEKAAEHWVISVKQNPKN
AAAFTYLGHYYATVSVDIPRAIKCYQRALSLNPDDSDSGEALCDLLDSQGKETLEVAICK
DASHNSPRAFWAFRRLGFLQVHQKKWSEAVQSLQQAIRGYPTSPDLWEALGLAYHRLGMF
TAAIKSYSRAIELEDSRVFALIECGNIFLMLGSFRKGIEQFQQALKISPQNMSALYGLAS
GLLGMAKECRNSGAFRWAASLLEDACKVAEASIKSAGNSSCTWKLHGDVLLTYAQVFPWT
EESQSLEYNAETFKKSVYSWKNTCRLAAKSARNSYQRALQLAPWQANIYIDIAISSNLIS
SFNQDYTLDKCTWKLPEKLTLGALALEGENSEFWVALSCLTECNALKQHSLIRGLQLDVS
LAYAWAYLGKLYREENEKKLARQAFDCARGIDPSLALPWAGMSADAHTGDSTPDDAFESC
LRAVEIFPLAEFQIGLAKLALLSGNLSSSQVFGAIQQAVQRAPHYHESHNLNGLVHEARM
QFQTAIASYRLARYAINISLGTVLKSHLKDISTNLARSLSKAGNAIGAVQECEDLKKEGM
LDAEGLQIYAFSLWQLGENDSALSVTRALAASVSTMDRISAAVSVSFICRLLYYISGPDL
AIGSILKMPKELFHSSKISFIVSAINALDQNNRLESIISSSRYFLASQEEITGMHYLIAL
SKLIKHRTKHHLGFQNGVNHLRKALHMYPNSILIRNLLGYLLLCSEVWGNSHVSSRCSVV
DDSDSKNKEGLKSAWEISSAGAVACHAIGNSEPRFSFPTCSCQCTSSGAMQELQKCLRRE
PWNHNARYLLILNLLQKAREERFPVNICIVLERLISVALSNEFYSGKEAICQYQKFQIYL
CASEILLQRGNIMGCIDQAKNASALSLPDSFQFFGHLLLCRAYAAEGNLKFSKEEYERCL
ELKTDFLVGWLCLKLMESQYEEQPVSNIFELAFKEGSEGRNNSWNMWMAVYSLVMGLICL
WNQDFLSAEEFLEQPCSLTSAESCIFLCHGVTSMEIARRYHDSQFLSSAIRSLSKAHITS
SVPIPIVSALLAQAEGSIGSRKKWERNLRLEWFSWPPEMRPAELFFQMHLLARQIASESD
SSSTVEGCQSPLQWVLRAIHTNPSDLRYWKVLPKLL
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacaacgggtgagctggagggagaagaaagaaggcgactggaggagttggtcgaa
aataatcccgatgactcttcccttcattttcaacttggagtatgcttgtgggagactcag
tcggagaaagagaaagcggcggagcattgggtgatttccgttaaacaaaaccctaagaac
gcagctgccttcacctacttgggccattactacgccaccgtttcggtcgatatccccaga
gccatcaagtgttaccagcgagcgttatcccttaatcccgatgattccgattctggggaa
gctttgtgtgatttgttggatagtcaaggcaaggagaccttggaggtcgcaatttgcaaa
gatgcttctcacaactctcccagggctttctgggctttccgccgattgggttttctccag
gtgcatcaaaagaaatggtctgaagctgtacaaagtcttcaacaagctattcggggctat
ccgacttctcctgatttgtgggaagctcttggtcttgcctaccaccggcttggcatgttt
actgctgctattaagtcctattcacgtgcaattgaattagaagattcaagagtctttgcg
ctgattgaatgtggaaacatctttttgatgcttggttcctttagaaagggaattgaacaa
tttcagcaagcactaaagatctcgccacaaaacatgtctgcactctatggacttgcttct
ggactgctaggtatggcaaaagaatgtagaaattcaggagcgttcagatgggcagcttca
ttattagaggacgcatgtaaagttgcagaagcaagcatcaaatcagctggaaattcatca
tgtacatggaagttgcatggtgatgttctgcttacatatgcacaagtttttccatggaca
gaggagagccagagtttagaatacaatgcagaaactttcaagaagtccgtatactcatgg
aagaatacctgtcgtttggctgctaaatctgccagaaactcttatcaacgagctttgcag
ttagctccatggcaggctaatatctacattgacattgcaattagttctaatcttatctct
tctttcaatcaggattacacacttgataagtgtacttggaagttacccgagaagttgaca
ctgggggctttagcactagagggtgagaactctgagttctgggtggctttgagctgtttg
actgagtgtaatgcacttaagcagcactcgttaatcaggggactgcagttggatgtgtct
ttagcctatgcttgggcatatcttggaaagctttatagagaagagaatgagaagaaattg
gctaggcaagcatttgactgtgctagaggtatagatccatccctggcattaccatgggct
ggcatgtcagctgatgctcatactggggattcaacaccagatgatgcttttgagagctgc
ctacgtgctgtggagatatttccccttgcagagttccaaattggacttgctaagcttgct
ttactttctgggaacctttcttcttcgcaggtatttggagctatccagcaggctgtgcaa
cgggcaccgcactaccatgaatcccataatttaaatgggctagttcacgaggcacgtatg
cagtttcaaactgccattgcttcttacaggctagctcgctatgccatcaacatttcttta
ggcactgtcctcaaatctcacttgaaagacatatcaactaatttggctagatcacttagt
aaggcagggaatgccattggtgctgtgcaagaatgtgaagacttgaagaaagaaggtatg
cttgatgctgaaggtttgcaaatatatgctttctccttatggcaattgggtgagaatgat
tcagccctctctgtgactagggccctggctgccagcgtttctaccatggataggatatct
gcagctgtgtctgttagtttcatttgtagattgctgtactacatttctggaccggattta
gcaattggtagcattctgaaaatgccgaaggaattatttcatagttcaaaaataagcttt
attgtgtctgccattaatgctctggatcagaataataggctggaatcgattatttcaagc
agtcgatactttcttgcatcacaggaggagatcactgggatgcattatctaatagcactt
agcaaactaattaaacataggacaaagcaccatcttgggtttcagaatggagtcaaccat
cttagaaaagctcttcacatgtaccctaacagtattttaataaggaacctacttggttat
cttttgctatgcagtgaagtatggggaaatagtcatgtgtcaagtagatgttccgtcgtt
gacgattctgactctaagaacaaagagggcttaaaatcggcctgggagatttccagtgct
ggggcagttgcttgccatgcgatcggcaatagtgaaccgagattctctttcccaacatgt
agctgtcaatgcacgagttctggagccatgcaagaattgcagaagtgcttacggcgggag
ccatggaaccataatgcccgatacttgcttatccttaatcttttacagaaagcacgtgaa
gagagatttcctgtaaacatctgtattgttcttgagcgtctcataagtgtggctctttct
aatgagttctattctggaaaagaagccatttgtcaatatcagaagtttcagatttattta
tgtgcttctgaaattcttttgcaaagggggaatataatgggctgtattgaccaagccaaa
aatgcttcagcactttctcttccggatagcttccagtttttcggacacttactattatgt
cgcgcctacgctgcagaaggaaatttaaaattttctaaagaagagtatgagaggtgcttg
gagcttaagacagattttctagttggttggctatgcctaaaactgatggaatctcagtat
gaagagcaacctgtttcaaatatttttgagttagccttcaaggaaggctcagaagggagg
aataattcatggaatatgtggatggctgtatatagtttagtgatgggcctgatatgttta
tggaatcaggactttctttcagcagaggaatttctggaacaaccttgttcgttgaccagt
gctgagagctgcattttcctttgtcatggtgtcacttctatggagattgctaggaggtat
catgattcgcaatttttatccagtgccataaggagtctcagtaaagctcatataacttct
tcggtcccaatacccattgtctcagcattgttagcccaagcagaaggaagcattggttct
aggaaaaagtgggagagaaatcttcgccttgaatggttttcttggccaccagaaatgaga
ccagcagagctgttttttcaaatgcatttgcttgcaagacagattgcatccgagtctgac
agttcatccacggtggagggctgccaaagtcccctgcaatgggttcttcgagccattcac
acaaacccttctgacttgagatattggaaagttctgccaaagcttttgtaa
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