Gossypium arboreum (tree cotton): 108453204
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Entry
108453204 CDS
T05776
Name
(RefSeq) uncharacterized protein LOC108453204 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108453204
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gab03041
]
108453204
Spliceosome [BR:
gab03041
]
Complex C
Other components
Step II factors
108453204
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
WD_LRWD1
eIF2A
Beta-prop_NWD2_C
Beta-prop_Vps41
Beta-prop_SCAP
PAN2_N
Motif
Other DBs
NCBI-GeneID:
108453204
NCBI-ProteinID:
XP_017606664
LinkDB
All DBs
Position
5:complement(125176..130787)
Genome browser
AA seq
573 aa
AA seq
DB search
MDSLQIYANNSDEEDLSHQPSTPSADSSPPRLIPSKSAAPKVDDTMLALTAAEARQAQSR
PIDPTQHVVAFNPTYDQLWAPTYGPAHPYAKDGIAQGMRNHKLGFVEDASIDSFVFDEQY
NTFHKYGYAADPSGSNYIGDLDALQKNDAISVYNIPQNEQKKRKIEREKDEDEVDPTEID
NPATDVWLMKNKRSPWAGKKEGVQTELTEEQKKYAEEYAKKKEEKGHQGEKGEHVVDKTT
FHGKEERDYQGRSWIAPPKDAKATNDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILS
AGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAGYDKNIKYWDTETGQV
ISTFSTGKIPYVVKLNPDEDKQNILLAGMSDKKIVQWDINTGQITQEYDQHLGAVNTITF
VDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQIL
IYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL
KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atggatagtctccaaatatacgcaaataatagtgatgaggaagacctaagtcaccagcca
tctactccgtctgcagactcttcacccccacggctcatcccctccaaatctgcagcacca
aaggttgatgacacaatgcttgccctaactgcagcagaagcacgccaagcccaatcaagg
cccattgatccaacccagcatgttgttgccttcaatccaacctatgaccaactctgggct
cctacctatggcccagctcatccatatgccaaggatggaattgcccagggcatgcgcaac
cacaagctgggatttgttgaggatgcctccattgactcttttgtttttgatgagcaatac
aacaccttccacaaatatggttatgcggccgacccttcaggaagcaactatattggtgat
ttggatgctttacagaagaatgatgccatttcagtctataacatcccacaaaatgagcaa
aagaagcgaaaaattgagagggagaaggatgaggatgaggttgatccaacagagattgat
aatccagctactgatgtgtggttgatgaagaataaaaggagtccttgggcaggtaaaaaa
gagggggtgcaaacagagttgacagaggagcaaaagaagtatgcagaggagtatgcaaag
aagaaagaggagaaaggccatcaaggtgagaaaggcgaacatgtggtggataagactacc
tttcatggcaaagaggagagagactaccaaggaaggtcttggattgcacctcctaaggat
gcaaaagcaacgaatgatcattgttatataccaaagagattagtacacacttggagtggg
cacacgaaaggtgtctcagctattcggttcttccccaaatatgggcacttaattctctct
gcagggatggatactaaagtgaagatatgggatgtgtttaattcaggaaagtgtatgagg
acatacatgggtcattctaaggcagtaagagatatttcattttgtaatgatggcactaaa
tttttgaccgctggatatgacaagaacattaagtattgggatactgaaaccgggcaggtt
atttctactttctcaactgggaagattccatatgtagttaagcttaaccctgatgaagat
aagcagaatattcttttagcaggtatgagtgataagaagattgtccagtgggatattaat
actggacaaattacacaagagtatgatcagcatttgggggcagtgaataccattacattt
gtggataacaaccggagattcgttacatcaagtgatgacaaatcacttcgagtatgggaa
tttggaattcctgttgttatcaagtatattagtgagcctcacatgcattctatgccatct
atttcgcttcaccccaacacgaattggcttgcagctcaaagtttggataaccaaattctt
atttacagtaccagagaaagatttcagcttaataagaaaaaaaggtttgctgggcacatt
gtggccggctatgcttgccaagtcaatttttcaccagatggacgctttgttatgtctgga
gatggagagggtaagtgctggttctgggactggaagagctgcaaagtttttaggactctc
aagtgccatgagggagtttgcattgggtgtgagtggcatcctctggagcaaagtaaagtt
gctacttgtggctgggatggcttgattaagtactgggactaa
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