Gossypium arboreum (tree cotton): 108453260
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Entry
108453260 CDS
T05776
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108453260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108453260
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108453260
mRNA degradation factors
5'-3' decay
Lsm complex
108453260
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
108453260
NCBI-ProteinID:
XP_017606755
UniProt:
A0A0B0P6G1
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Position
5:complement(11460422..11463282)
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AA seq
128 aa
AA seq
DB search
MSWAGPEDIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDL
YCDIPLGLYVIRGENVVLIGELDLEREELPPHMTHVSVAEIRRAQKAEREATDLKGTMRK
RMEFLDLD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggcaggccctgaagatatctacctttctacttctcttgccagttatcttgac
agaaaacttttagttctgctgcgagatggacggaagctcatgggaacattacgttcattt
gatcaatttgccaatgctgttcttgagggtgcttgtgaaagggttattgttggtgacctt
tattgtgacatccctttaggtctctatgtaatccgtggggaaaatgttgtcttgattggt
gaactggacttggagagagaggaacttcctccgcatatgactcatgtttctgttgcagaa
attagaagggctcagaaagcagaaagggaagcaacagatcttaaaggtacaatgaggaaa
agaatggagttccttgatttggactaa
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