Gossypium arboreum (tree cotton): 108453291
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Entry
108453291 CDS
T05776
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108453291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108453291
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108453291
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108453291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
108453291
NCBI-ProteinID:
XP_017606796
LinkDB
All DBs
Position
5:complement(7450886..7456692)
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AA seq
663 aa
AA seq
DB search
MSGLLNSSINGSASNLPDSSGRSFGTSFSSQSGAASPVFHHAGTIQGLHNIHGSFNIPNM
PGTLTSRNSTLSNVPTGGVQQPTGSLSGGRFASNNLPIALSQLSHGGSHGHSGVTNRGGI
SVVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNAVPGLGVSPILGNAGPRITSSMGNMVG
GGNIGRSVSSGGGLSVPGLASRLNLSANSGSGSLSLQGQNRLMSSMLPQGSPQVISMLGN
SYPSAGGPLSQGHVQAVNNLSSLGMLNDVNSNENSPFDITNDFPQLTSRPNSSGGPQGQL
GSLRKQGLTPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDLHQKEQLHDNTISMMQSQQ
FSMGRSGAFNLGGSYSSHRPQQQQHAPSASSSGVSFASVNNQDPLHLHGSDIFTSSHSGY
RTQNSGPPGIGLRPLNSSNTVSGMGYDQLIQQYQQHQNQSPFRLQQMSAVNQSFREPGLK
STQAAQSNSDPFGLLGLQSVIKMTNPDLTSLALGIDLTTLGLNLNSSENLHKTFGSPWSD
EPAKGDPEFTVPQCYYAKQQPALHQGYFSKFTVDALFYIFYSMPKDEAQLYAANELYNRG
WFYHKEFRFWFMRVPNVEPLVKTNTYERGSYHYFDPNSFEIIRKDNFVVHYELLEKRPSL
PQH
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggttacttaattcttctattaatggatcagcttcaaatcttccggacagtagc
ggacgttcttttggaacatctttctcaagtcagtctggtgcggcttcccctgttttccat
cacgctggtactattcaaggcctgcacaatattcatggtagctttaatattcccaacatg
cctggtaccctcacatctagaaactcaacattaagtaatgttccaactggtggggttcaa
caacctactgggagcctttctggtggcagatttgcatcaaataatctccctattgctctt
tctcagttatctcatggcggctcccatggacattcaggagtgacaaatagaggaggtatt
agtgttgtaggaaaccctggatttagtagtaacacaaatggagttggtggctctatacct
gggattctaccaacctctgctgcaattggtaaccgtaatgctgttccaggattgggagta
tccccaattttgggaaatgcaggtcctaggatcacgagttctatgggaaacatggttggt
ggaggcaacatcgggaggagtgtcagctctggtggaggattatctgtacctggtcttgca
tctcgtctgaatttaagtgccaatagtggatcaggaagtttaagtttgcagggacagaat
cggttgatgagtagtatgcttcctcaaggatctcctcaggtaatttcaatgttaggcaat
tcttatcctagtgctgggggtccactttcccagggccatgttcaagctgtgaacaatctt
agctctctgggaatgttgaatgatgtgaactcaaatgaaaattccccttttgacataact
aatgatttccctcagttgacaagtcgtcctaattcttctggagggcctcaaggacaattg
ggttcattacgaaaacaaggtcttactcccattgttcaacagaaccaagagttcagcatt
caaaatgaagatttccctgctttaccaggctttaaaggtggaaatgctgattatgcaatg
gatttgcaccagaaggagcaacttcatgacaataccatttcaatgatgcaatctcagcaa
ttctctatggggagatctggagcatttaatttgggtggatcctattcatctcatcgccca
cagcagcagcaacatgctccatcagccagtagtagtggtgtctcctttgcatctgtaaac
aaccaagatcctcttcatttacatggctctgatattttcacatcttcgcattcgggctac
cgcacacagaacagtgggccacctgggattgggctaagacctctaaattcctcaaatacg
gtttctggtatgggttatgatcagcttatccagcaatatcagcaacatcaaaaccagtcc
ccctttcgtctgcaacagatgtcagctgtcaatcagtcatttagggaaccaggcttgaaa
tcaacacaggctgcgcaatctaattctgacccttttggtttacttggtttgcaaagtgta
ataaagatgactaatcctgatctgacttcccttgctcttggaattgatctgacaactctt
ggcttaaatctgaattcatcggaaaatcttcacaagacttttggttctccatggtcagat
gaacctgctaagggtgacccagagttcaccgtgccacaatgttattatgctaagcaacaa
cctgctttgcatcaaggctatttttcgaagtttacagtggatgcgttgttctatatattt
tacagcatgccaaaagacgaagcccaattatatgctgcaaatgaactttataatagaggc
tggttttaccacaaggagttccgattctggttcatgagggtccccaatgtggagccacta
gttaagacaaacacatacgagagaggttcataccactattttgatcccaactcatttgaa
ataatccgcaaggataattttgtcgtccattatgagttgttggaaaagagaccgtcgcta
cctcaacattaa
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