Gossypium arboreum (tree cotton): 108453519
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Entry
108453519 CDS
T05776
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14-like isoform X2
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108453519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gab03041
]
108453519
03009 Ribosome biogenesis [BR:
gab03009
]
108453519
Enzymes [BR:
gab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108453519
Spliceosome [BR:
gab03041
]
Complex A
U1 snRNP components
U1 related factors
108453519
Complex B
108453519
Ribosome biogenesis [BR:
gab03009
]
Eukaryotic type
Pre-60S particles
Helicases
108453519
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
108453519
NCBI-ProteinID:
XP_017607152
LinkDB
All DBs
Position
9:9346630..9351582
Genome browser
AA seq
686 aa
AA seq
DB search
MAATATASFAGPTFAPPDPTLPKPWKGLVDGKTGYLYFWNPITNVTQYERPTIVDSVPKS
SPVRSSIQIQQYSEVRYGYNPDKENDRYGRGNNDASKPEPVSRFNQNASGGPILSHNTPN
GTHGSVVGGSSAGRHGLVAEGSNLSGDAYRHQHEITVTGDEVPSPFSSFEATGFSSEILR
EVHSAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGYLIPGFMHLKQCRKDPRMGP
TVLVLSPTRELATQILDEALKFGKSSRISCTCLYGGAPKGPQLREIERGVDIVVATPGRL
NDILEMSRISLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPSCRQTLMYTATWPKEVRK
IAADLLGNPVQVNIGNINELVANKSITQYVEVLSPMEKHRRLEQILRSQESGSKIIVFCS
TKKMCDQLARNLSRQFGAAAIHGDKSQADRDYVLNQFRTGRSPVLVATDVAARGLDIKDI
RVVINYDFPTGVEDYVHRIGRTGRAGATGLAYTFFVDQDSKHASDLIKVLEGANQLVPTE
LRDMASCGGLMGRPRRWAPSSGGFGRGRGGRTDLGYGGWDSGRGGRGISTSSTWLEKTGG
GRGNDHESRDRYNRGFHGSNDRRRSRSRSPAGWGDCHKNTGHDRSRSCSADRYDKGPRLH
EEMIKRDRSPPLQQRMPPNSNGFRGS
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggctgctactgcaactgcttcttttgcgggcccaacatttgctccgccagatcccact
cttcccaaaccatggaaaggcctagttgatggtaaaactggttatctctacttttggaat
ccaataaccaatgtcacccaatatgagaggcccacaattgtagattctgtcccgaagtct
tccccagtgcgttcttcaattcagattcagcaatattctgaagtgcggtatgggtataat
cctgacaaggaaaatgatcgttatggaagaggcaacaatgatgcatcaaaacctgagcca
gtatcaaggtttaaccagaatgcaagtggtggacctattctttcccataatacacctaat
gggactcacggctctgtggttggaggatcttctgctgggagacatggattagtggctgag
ggaagtaatttgtctggtgatgcttatcgccatcagcatgagataactgtaactggagat
gaagtgccttcacccttttcatcatttgaagctactggcttttcttctgagatacttaga
gaggtacacagtgctgggttttctgctccgaccccaatccaggctcagtcgtggccaatt
gcattgcaaggtagagacattgtggccattgctaaaacgggttctgggaaaactttgggt
tacctaattcctggatttatgcatctcaagcaatgccgtaaagatcctcgaatgggtcca
actgtgttagtattgtcaccaacgagggagttggctactcagatactagatgaagctctc
aagtttgggaaatcctcaagaattagttgcacgtgtttgtatggaggagcaccaaagggt
cctcagttgagagagattgagagaggagtagatattgtggttgctactcctggccggtta
aatgatattctagagatgagcagaatcagccttcgtcaagtttcttaccttgtgttagat
gaggctgatcgcatgttggacatgggttttgaacctcaaataaggaagattgtgaaagaa
gtgcctagttgcaggcagactctcatgtacacggcaacatggccgaaggaagtccggaaa
attgctgcagatctactcggaaatcctgttcaggtcaacattggcaatatcaatgagctt
gtggcaaacaagtctattacacagtatgttgaagtattatcaccaatggaaaaacacaga
agattggaacagatactgcgctcccaagaatccggatccaaaatcatagttttttgttca
accaagaagatgtgtgatcaactcgcccgcaacctcagtcgacagtttggagctgctgct
attcatggagacaaatctcaggctgacagggactacgtactgaatcagtttcgaactggg
aggtcaccagtgcttgttgctactgatgttgctgctcggggtttggacattaaagatatc
agggtagtaataaactatgacttccccactggagttgaagattatgttcataggattgga
aggactggaagggcaggtgcaactggattggcttatacattcttcgtcgatcaggattcg
aagcatgcttcagatctcatcaaagttctggaaggagcaaaccagctggtgcccactgaa
cttcgtgatatggcttcatgtggtggtttgatgggaaggcctaggcgttgggctccaagt
tctggtggctttggtaggggacgtggtggacgtactgatttgggctatggtggctgggac
agtggaaggggtggtcgtggaatttctacatcctctacctggctcgagaaaaccggcgga
ggacgtggaaatgatcatgagtctcgtgataggtacaatcgtggtttccatggtagtaat
gataggagacgaagtcgcagtcgaagtcctgctggttggggtgattgtcataaaaacact
ggtcatgatcgtagccgtagttgtagtgctgacaggtatgataagggtcctcgcttacac
gaggagatgattaaacgtgatcggtcaccgccactgcaacaacgcatgccccctaacagt
aatgggtttcgagggagctga
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