Gossypium arboreum (tree cotton): 108453543
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Entry
108453543 CDS
T05776
Name
(RefSeq) SWI/SNF complex subunit SWI3C-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108453543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gab03021
]
108453543
03036 Chromosome and associated proteins [BR:
gab03036
]
108453543
Transcription machinery [BR:
gab03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108453543
Chromosome and associated proteins [BR:
gab03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108453543
PBAF complex
108453543
GBAF(ncBAF) complex
108453543
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
FAM92
ZZ
DUF7685
CLP1_P
Zn_ribbon_2
CFAP68
DUF3306
Motif
Other DBs
NCBI-GeneID:
108453543
NCBI-ProteinID:
XP_017607187
LinkDB
All DBs
Position
5:27055080..27061961
Genome browser
AA seq
772 aa
AA seq
DB search
MPASSPSDGRGRWKRRKRDRRPKHLQEDNDVPEEDVEEEDNNNEDIDNHRDNNSGDDAGG
GFRDPSLAGSSECEVLADGGVRISEFPPVVKRAVNRPHGSVMAIVAAERAGLVGDSKDHQ
QVALAVLENVSYGQLQAVSTEAPIVEPEKYVITPPPIMEGRGVVKRFGSRVHVLPMHSEW
FSPASVHRLERQVVPHFFSGKSPEHMPEKYMECRNHIVAKYMDNPLKRITVSDCQGLIDG
ISNEDLTRIVRFLDHWGIINYCAAAPSHEPWSAGSYLREEPNGDVHVPSAALKSIDSLIK
FDKPKCRLKAADVYSSLPCHADISDLDNRIRECLDENNCTSCSQPVATSYYQSQKEVDVL
LCSDCFHDGRFVSGHSSIDFVRVDSTKDYGDLDGDSWSNQETLLLLEAMEIYNENWNEIA
EHVGTKSKAQCILHFVRLPMEDGLLQNLEVPSMPKSTIVANGDNQRLHSNMNGSLPGPSL
QDADYQSKVPFENSGNPVMAMVAFLASAIGPRVAAACAHASLAALAEDVDKEGSGHGNRM
NMESVHSREGGLHGSVHQKENSAIHSFGQNEAEGHPLSAEKVKAAAKAGLAAAAMKAKLF
ADHEEREIQRLSANIINHQLKRLELKLKQFAEVETLLMKECEQVEKTRQRFAAERARIVS
QFGTTGVASQMSVPVISSPMVNNIGNNRQQVMSGSPSTPSNSGYVNNQPVHPHMPFMQRQ
PMFPMGPRMPHTAMQASTSAPPNVMFNSPGNAQPTLNHPLMRSVSGTGSGLG
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgccagcttcttctccttcagatggtcgaggtcggtggaagcggcggaagcgagaccgg
aggcccaagcatctccaggaagataacgatgtcccggaggaagatgtagaagaggaagat
aacaacaacgaggacatcgataaccaccgcgataacaattccggggacgatgccggaggg
ggatttagggatccgtctttggcggggtccagcgagtgtgaggttctggctgatggtgga
gttcgcatctcggagttcccccccgtggtcaagcgggctgtgaaccgtcctcacggttct
gtgatggcgatcgtggcggctgagcgggccggtttggttggggatagcaaggaccaccag
caggtggctctggcggttttggagaacgtttcgtacgggcagttacaggcggtttcgact
gaagctcccattgttgaaccggagaagtatgtgattacacctcctccgataatggagggg
cgtggcgttgttaagaggtttgggagtagggttcatgtcctgccaatgcattcagagtgg
ttctcgccagcctccgtgcatcgactagaaagacaagttgtgccacattttttctctgga
aaatcacctgaacatatgccggaaaaatatatggaatgtagaaaccacattgttgccaag
tatatggataatccattgaagagaattacagtttctgattgccagggattgatagatgga
attagtaatgaggatttaactcgaattgttcggtttcttgatcactggggaatcatcaat
tattgtgcagctgcaccaagtcatgagccttggagtgctgggtcctacttaagggaggag
ccaaatggcgatgttcatgtgccatcggctgcattaaagtctattgatagcttgatcaaa
ttcgacaagccaaaatgtaggctcaaggcagctgatgtttattcatcattgccatgtcat
gctgatatctctgacttggacaatagaatacgagagtgcctagatgaaaacaattgcact
tcatgttctcagcccgttgccacttcatattatcagtcacaaaaggaggttgatgtactg
ctgtgctctgattgcttccatgatgggagatttgtttctggtcattcaagcatagatttt
gttagagtagattcaacaaaagattatggggacctagatggagatagttggagcaaccag
gaaactttactgttgcttgaggcaatggaaatttacaatgagaactggaatgaaatagct
gagcatgtgggcactaagtcaaaagcacaatgcatacttcattttgtacgtctacccatg
gaggatggcctattgcaaaatttggaagttccgagcatgcccaagtcaacaattgttgca
aacggagacaaccaaagattacactcaaacatgaatgggagtctaccagggcccagcctt
caagatgcggattatcaaagcaaggttccttttgagaattctgggaatccagttatggct
atggttgcttttctggcctctgctattggaccaagagttgctgctgcctgtgcccatgca
tccttggcagcattggctgaagatgtagataaggaaggttcgggacatggtaataggatg
aatatggagagtgtacatagtagagaaggtggtttacatggttccgttcatcaaaaagag
aactcagcaatacattcatttggtcaaaatgaggcagagggtcatccactatctgctgaa
aaagttaaagctgctgccaaagctggccttgcagctgcagctatgaaggcaaaactgttt
gcggaccatgaggaacgagaaattcaaaggttatcagccaatatcataaatcatcagttg
aagagattggagctgaagcttaagcagtttgcagaagttgaaacgttactcatgaaagaa
tgtgaacaagtggaaaaaacaaggcaaaggtttgctgctgagagggctcgaattgtatct
caatttggaaccaccggagtcgcttcacaaatgagtgtacctgtgatttcttctcccatg
gttaataacattggcaacaacaggcaacaggtaatgtcaggctcaccttcaacgccaagc
aattctggatatgttaacaaccaaccagtacatccccatatgccattcatgcaacgccaa
ccaatgtttcctatgggtccgaggatgccccatacagccatgcaagcatccacatcagct
cctcctaatgtcatgttcaactccccagggaatgcacaaccaactcttaaccatccacta
atgaggtcggtttccgggactggatctggtctaggttga
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