Gossypium arboreum (tree cotton): 108453593
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Entry
108453593 CDS
T05776
Name
(RefSeq) zinc finger CCCH domain-containing protein 41-like isoform X1
KO
K13192
RNA-binding protein 26
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gab01009
]
108453593
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108453593
03041 Spliceosome [BR:
gab03041
]
108453593
Protein phosphatases and associated proteins [BR:
gab01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108453593
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
108453593
Spliceosome [BR:
gab03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
108453593
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_Nup35
PHM7_cyt
zf_CCCH_4
CCDC113_CCDC96_CC
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
108453593
NCBI-ProteinID:
XP_017607276
LinkDB
All DBs
Position
9:complement(10203030..10208934)
Genome browser
AA seq
934 aa
AA seq
DB search
MELKVLSPKPGGTSAPDCISDPEEKEVSDEEDDDRNHKHRRRDTCSQSLERDSTDPVFTR
PYRKRNKPLENGHNESQAAETCKNSNSLLLEKDLKSKFDRRYPGLASLPRGHLDLNQRIR
SNQTFSGDSGPGRGRGRDNSSWNHRDSRFNSVDIAYQLVQPGSVAPSLFAGRGLPNLSNT
QAPSRSAFAIMPGIPNGSLDTLHSIGLQGVLRPPMNSSLNMVIPRQRCRDFEERGFCLRG
DMCPMEHGVNRIVVEDVQSLSQFNLPVSVPSAQILATSAGPGPLPSVFPPSTTLVNGKGI
HSKSSKSGMTEDATGLNCAYTATTSAGGDLYDPDQPLWNNNGPEASAALTGQCSPKINEM
EPLRNDDISDLHHGMLCESADNELPIRSSRSQGMNLSVWGRIGSSRSRIEAKDKIDHLPS
DHLENETKKEQEPFPSSQDTSCQVKRICSEDDGSKVMDLSLKSQIDSHSRRKPTQKALRT
LFVNGIPQKCNKREALLSHFRKFGEVVDIYIPQNSERAFIQFSRREEAEAALKAPDAVMG
NRFIKLWWANRDSIPDDGVNSGMPVTPSGLTASGVPPQPVANKGKDNLQCIAQKSSVVHG
TDVPSLKSPKSVSTNGPQAPPLLQKKLESLEQMKEELRKKQEMLEQKRNDFRRQLNKLEK
QSSIVKGDPLSEPAAKRHKVGSAPDPAKALIPSSSEPSASAAKTCTKEMTDKNKLMENVV
SRSPKSSTTMALQESMGSKQQYCKPRQSAPMRHPFLMNKYRLDNRPTAFRVIPPLPSGFA
DVDVLKEHFLQYGDLFSVELQDVENEDNDDIGSEALKKCSALITYSTRQSAERAYVNGKC
WQGNNLQFKWLIYNTNPSSKETSSSAPKQTLEADVTKEEKTSHGVAQEVVGSGNGESENS
DRESFAEHMELAEVSEQSPSPTSSMKESPKGDTS
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggagctgaaagtcttatcgcctaagcccggtggtacttctgctcctgattgcataagt
gatccggaggagaaagaagtcagtgatgaggaagatgatgatcgcaaccataagcatcgt
aggagggatacatgttctcaatcattagagagagattctacagatcctgtatttacaagg
ccatacagaaagcgcaataaacctttagaaaatgggcataatgaatctcaagcagctgaa
acctgcaaaaattctaacagtttgcttctagaaaaagacttgaaatctaagtttgacaga
agataccctggattagcatcacttcctcgaggacatttggatctgaaccagagaattagg
tctaaccaaacattcagtggagattctggtcctggtcggggaagaggaagggataactct
tcttggaatcaccgtgattcaaggttcaactctgttgatattgcttatcaattggttcag
ccaggatctgttgctccaagtctctttgccggaaggggattgcctaatctttcaaacaca
caagccccatcacggagtgcctttgccattatgccaggaataccaaatggcagccttgat
acactccactctattggtttacaaggggtgcttaggccaccaatgaattcttcattaaat
atggtcatccctcgccaacgctgtagagactttgaggagcggggattttgtctaagagga
gacatgtgtccaatggagcatggtgtcaatcgtattgttgttgaagatgttcagagtctg
tcacagtttaaccttcctgtttcagttccaagtgcacaaatattggcaacatcagctgga
cctgggccgctaccttctgtttttcctccttcaaccacattggtgaacggcaagggtata
catagcaaaagtagcaagtctggaatgactgaggatgctacaggtttgaattgtgcatat
actgctactactagtgcaggtggagatttgtatgatcctgatcaacccttgtggaataac
aacggcccagaagcatcggcagcactcacaggacagtgttcacccaagattaatgaaatg
gaaccattgcgaaatgatgatatctctgatcttcatcatggcatgttatgtgagagtgct
gataatgaattgccaattagaagcagcaggtcacagggcatgaatttatcagtttggggt
agaatcggtagctccagaagtagaatagaagcaaaagataaaattgatcatttaccctca
gaccatcttgagaatgaaaccaagaaggaacaagaaccatttcctagctcacaggacact
tcctgtcaagttaagcggatctgcagtgaggacgatggctccaaagttatggatttgtca
ttgaagtcacagattgattcgcatagtcgcagaaaacctactcaaaaggcactccgtaca
ctgtttgtcaatgggattccccagaaatgcaacaaaagagaggctcttctgtctcatttt
cgtaaatttggagaggttgttgacatttatattccacaaaatagcgaacgggcattcatc
cagttttcaaggagggaagaggcagaagctgctcttaaggcacctgatgctgtaatgggt
aaccgctttattaagctctggtgggctaatagggatagcatacctgatgatggcgtgaac
agtggcatgccagttactccaagtggtctaacagcttctggtgttccacctcaacctgtt
gctaataaaggaaaggataatcttcaatgtattgctcagaagagtagtgttgtccatggc
actgatgtgccttctttgaaatcccctaaatctgttagtacgaatggtccccaggctcca
cctctgttgcagaaaaagttagagtctctggagcaaatgaaagaggaactacgcaagaag
caggaaatgctggagcagaagcggaatgacttccggcgccagttgaacaaacttgagaaa
caatcaagtattgtcaagggtgatccactgtctgagccagcggctaagaggcacaaggta
ggaagtgcacctgatcctgcaaaagctttgattcctagttcctctgaacccagtgcttct
gcagcaaaaacatgcactaaagagatgacagataaaaacaaattaatggaaaatgttgtt
tctcgaagtccaaaatcaagtaccaccatggcattgcaggaatctatgggctcaaagcag
cagtactgtaagcctcgtcagtctgcacccatgaggcatccattcctgatgaataaatac
agattggacaaccgacctactgcttttagagttattccgccattgccttctggttttgca
gatgttgatgttttgaaggagcacttcttacaatatggagatcttttctctgtggagcta
caagatgtggaaaatgaagataatgatgatatcggatctgaggcattgaagaaatgctca
gctcttataacatacagcacacgccaatcggcagaaagggcttatgtaaatggtaaatgc
tggcaaggcaacaatttgcagtttaaatggttgatatataacactaaccctagtagcaaa
gaaacttcatcttccgcaccaaagcagactttagaagccgatgtcacaaaagaagaaaaa
acatcacacggcgttgcccaagaagttgttggttcaggcaatggggaatccgagaattcg
gatagagagagtttcgctgagcatatggaattggctgaagtttcagagcagagtccatcc
ccaacatctagcatgaaagagtcaccaaaaggcgacacgagttga
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