Gossypium arboreum (tree cotton): 108453817
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Entry
108453817 CDS
T05776
Name
(RefSeq) uncharacterized protein LOC108453817 isoform X1
KO
K14546
U3 small nucleolar RNA-associated protein 5
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
108453817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gab03009
]
108453817
Ribosome biogenesis [BR:
gab03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
108453817
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Utp12
ANAPC4_WD40
Beta-prop_THOC3
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR5
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR3_1st
WD40
Beta-prop_WDR3_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_Vps41
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_ACSF4
EIF3I
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Hira
Motif
Other DBs
NCBI-GeneID:
108453817
NCBI-ProteinID:
XP_017607626
UniProt:
A0A0B0PZV0
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Position
5:10118792..10124127
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AA seq
625 aa
AA seq
DB search
MGKQKVKPLLTCFTQEGDYLAISSPDGTVKIWSTSTGSLLAEWKQSDGNLPNSYSCMACS
FIPKKHKKGSGTCLLAIGLNEGDIWIIDVLAGDKKWSSTGYYPSGIAGLSFRNKGHSLYV
IGSNGKASEMNSENGDLIREFKAAKRSITSLTFSQDGKYLALANGKLRVSNLENGKELLK
SPDDLDPVQYISISNDAKTIVTSGFGETNLQVWSCDLSSKTLSGGSVISMPRPPIAFECK
NSGSDEDGSVILALSESGIAYVWNLDSVSQDDVEPTKITVKLDKAEGDQQKSAGSRKSRI
PVISARLHATGMDQQLVALIAYGPLDSPQFSLVNVSKAGENIVINAVDQTETIQENGTSL
LKVDPNGKPNKKRAAPDPDLATTRSRNDTGHGENADGVLVNDDPSEPTMAEKLASLNLIE
NGKNETNENQERKEPSTHGKPPIADSVNVLLKQALRADDRALLLDCLYTQDEKVIANSVS
QLNPSDVLKLLQSLVSITQSRGAVLACALPWIKSLLLHHASGIMSQESSLLALNSLYQLI
ESRVSAFESALQISSCLDFLYAGIVEDEFVENAAIPVIFEDMDESDEEQPEDAMETDDQE
NEDGEALDEASDGVSDFEGIDDMSD
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggggaagcagaaagtgaaacccctccttacatgtttcactcaagaaggtgattatctc
gccatttcgtctccggatggaactgttaaaatttggagcacaagtactgggagtttattg
gcagagtggaagcagtcagatggcaaccttcctaatagttattcctgtatggcttgcagt
tttatcccaaagaagcataaaaaggggagtggaacttgcttacttgctattggattaaat
gaaggggacatctggattattgatgtcttagctggtgacaagaagtggtcatctactggt
tattatcctagtggaattgctggtctttcattcagaaataaaggtcatagtctgtatgtc
attggaagcaatggaaaggcatctgaaatgaactcagaaaatggagatttgataagggag
ttcaaagctgccaaaaggtccatcacttctttgacattttcacaagatggaaagtatttg
gctttggccaatggtaagcttcgggtctccaacctggaaaacgggaaagagcttctaaag
tctcctgatgatttggatcctgtgcaatatataagtatatccaatgatgccaagacaatt
gttacatcagggtttggggagacaaatcttcaagtctggagttgtgatttgagttccaaa
actctgagtggtggctctgttatttcaatgcctcgccctccgatagcttttgaatgtaag
aatagtggtagtgacgaagatggttctgtgatcttggcactttcggagtctggtattgct
tatgtttggaatttggactccgtttcccaggatgatgttgaaccaacgaagattactgtc
aaacttgataaagcagagggagaccagcagaagagtgcaggctcaaggaaaagtcgtatt
cctgttatctcagctagattacatgctacaggcatggaccaacagcttgttgcccttatt
gcttatggtccattagattctccacagtttagtcttgtgaatgttagcaaagcaggggag
aatattgttataaatgctgtggatcagactgaaactattcaagaaaatgggacatctttg
ttaaaagttgatccaaatggaaaaccaaataaaaaaagagctgctcctgatccagacctt
gctacgacaagaagcagaaatgatacgggtcatggagagaatgctgatggagttctcgtc
aatgatgatccgagtgagcctaccatggctgagaaacttgcaagtttaaatttaatagaa
aatggaaaaaatgaaaccaatgaaaaccaagaaagaaaagaaccctctacccatggcaag
cctcccatcgcagattcagttaatgttctgcttaagcaggcactccgtgctgacgatcgt
gcacttctgttagattgcttatacactcaagatgagaaggttattgcaaattcagtctct
caattaaatccatctgatgttctcaagcttttacaatctcttgtatctataactcaatca
aggggtgcagtattggcatgtgcgcttccttggataaaaagtttacttcttcatcacgct
agtggaattatgtcccaggaatcctctcttcttgctctgaactctttgtatcagcttatt
gaatctagagtctcagcttttgaatcagctcttcaaatatcaagttgcttagacttcctt
tatgcagggattgttgaggatgagtttgttgagaatgctgcaattccagtaatatttgag
gacatggatgaaagtgatgaagagcaaccggaagatgcaatggaaactgatgatcaagag
aacgaagatggggaagcacttgatgaagcatctgatggggttagtgattttgaagggatt
gatgatatgagtgactga
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