Gossypium arboreum (tree cotton): 108453845
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Entry
108453845 CDS
T05776
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108453845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gab03041
]
108453845
03009 Ribosome biogenesis [BR:
gab03009
]
108453845
Enzymes [BR:
gab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108453845
Spliceosome [BR:
gab03041
]
Complex A
U1 snRNP components
U1 related factors
108453845
Complex B
108453845
Ribosome biogenesis [BR:
gab03009
]
Eukaryotic type
Pre-60S particles
Helicases
108453845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
108453845
NCBI-ProteinID:
XP_017607673
LinkDB
All DBs
Position
5:complement(11015983..11021462)
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AA seq
505 aa
AA seq
DB search
MSRYDSRSGDPTSYRDRRSDSGFGGASAYGGSVRSSSSRRDYDGAEPPRKLDLDGLTPFE
KNFYIESPSVAAMSDAEVEDYRRRREITVEGRDVPKPVNSFRDIGFPDYVLQEITKAGFV
EPTAIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILAPGDGPIVLVLAP
TRELAVQIQQEAAKFGASSRIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESN
HTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLY
NPYKVVIGSADLKANHAIRQHVNIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQI
TRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD
FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIAILEEAGQKVSPELAAMGRG
APPPPSGHGGFRDRGKGYSGGRTWS
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgatacgatagccgttccggcgatcccacctcttaccgcgatcgtagaagtgac
tcagggtttggtggggcttcagcctacggcggttcagtgcggtcctcatcaagcagaagg
gattatgatggtgctgaaccgcctaggaagttggatttggatgggttgaccccttttgag
aagaatttttatattgagtcaccatcggtggcggcaatgtctgatgcggaggttgaggat
tatcggcggcgaagggaaattacagttgaaggtcgtgatgttccaaagcctgtgaatagt
tttcgtgacatcgggtttccagactatgtactgcaagaaatcacaaaagctggatttgtt
gaaccaacagccatacaagctcaaggctggccgatggctttgaagggccgtgatctcatt
ggtattgctgaaacagggtcagggaagactcttgcctatttattgcccgcaattgtccat
gtcaacgcacagccaattttagctcctggagatggtcctattgtactagtcttagctccg
acacgtgagcttgcagttcaaatacaacaagaggctgctaagtttggtgcatcatcaagg
atcaagaatacatgcatatatggaggggttccaaagggacctcaagtccgtgatctccag
aaaggtgttgagattgttattgctacaccagggaggttgatagatatgttggagtcaaat
cacacaaatttgcgaagagttacatatttagtgttggatgaggcagatcggatgttggac
atggggtttgaacctcagataaggaaaatcgtttctcagatccgccctgaccgtcaaact
ttgtattggagcgcgacttggccgaaggaggttgaacagttggcaaggcagtttctttac
aacccatacaaagtggtaattggatctgcagatttaaaggctaaccatgcaattcgccaa
catgttaacattgtttcagagagtcagaaatataacaaattggtgaagctgctcgaggat
atcatggatggcagcagaattttgattttcatggataccaagaagggttgtgaccaaatc
actaggcaacttcgcatggatggttggcctgctctgtcaattcatggagataaaagtcaa
gcagaaagggattgggtcctttcagagtttaaagctggcaagagccctataatgactgca
acagatgttgcagctcgtggtttagatgtgaaagatgtgaagtatgtaatcaattatgac
ttcccgggatctctcgaggattatgtccatcgcattggtcgaacagggagggctggggca
aaaggaacagcctatactttcttcacagctgcaaatgcaagatttgccaaagaacttatt
gccatacttgaggaagctggccagaaggtcagtcctgaattggcagcaatgggacgcggt
gcacctcctcccccatcaggtcatggtggttttcgagaccgaggtaagggatacagtggc
ggtcgcacatggagctga
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