Gossypium arboreum (tree cotton): 108454513
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Entry
108454513 CDS
T05776
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1 isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108454513
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108454513
Enzymes [BR:
gab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
108454513
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108454513
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108454513
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
PDE12-like_N
Motif
Other DBs
NCBI-GeneID:
108454513
NCBI-ProteinID:
XP_017608491
UniProt:
A0ABR0Q9Y9
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Position
4:complement(36889882..36895917)
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AA seq
602 aa
AA seq
DB search
MLSVLRVHLPSDIPIVGCELTPYVLLRRPDKTVTTDDVPESAPLDGHFLRYKWYRIQSDR
KVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENG
NEEEEIFGRYNSSGSGVINASLTGSASSTSLTNGSTPLYPAAVTQRSGGETWFEVGRSKT
YTPTADDIGHVLKFECVIVDAETKQPVGHPNTILTSRVIPAPSPSPRRLIPVSGADMLGN
LQSDGRVSSSGSFTVLSYNILSDSYASNELYSYCPSWALSWPYRRQNLLREIVGYRADIV
CLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYSGNIHTIDGCATFFRRDRFSHVKKY
EVEFNKAAQSLTEVAVQTTQKKAALNRLVKDNVALIVVLEAKFSNQGADNPGKRQLLCVA
NTHVNVPQELKDVKIWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHSLLAMGKVD
PMHADLLVDPLAILRPHSKLTHQLPLVSAYSSFLRGVGLGLEQQRRRMDPTTNEPLFTNC
TRDFIGTLDYILYTADSLTVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRCVPRP
RR
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgctgagcgtgctacgtgtgcacctcccttctgatataccaattgttggctgcgagctc
acgccttacgtgctcttacgccgacctgacaagaccgttacaaccgatgatgtgcctgag
tcggcccctcttgatggccacttcttgaggtataagtggtatcgcatacaaagtgataga
aaagttgctgtgtgtagtgtacatccctctgagcaagccacgctgcagtgccttggttgt
gttaaggctaaaatacctgttgctaaaagttatcattgctctccaaagtgcttctcagat
gcgtggcagcatcaccgtgttctgcatgaccgtgctgcaagtgctgtaaatgaaaatgga
aatgaggaggaagagatatttggtcgttacaattcctcaggttctggagttataaatgct
agcttaacaggttcagcatcaagcactagcttgacaaatggttcaacacctctgtatcct
gctgcagtcacacagaggagtggtggtgaaacctggtttgaagttggacgctctaaaaca
tatacaccaacagctgatgatattggccatgttctcaagtttgagtgtgttattgtagat
gctgagacgaaacaacctgttggacatcccaatactattttgacatctcgtgttattccg
gcaccttcccctagtcctaggcgcttgatccctgtaagtggagctgatatgttgggaaat
ctacagtcagatggtcgtgtttcatcctctggaagttttactgtcctctcttacaacatc
ttgtctgactcatatgcaagcaatgagttatacagttattgcccttcatgggctctttct
tggccatatcgcaggcagaatttgttgcgggaaattgttggttatcgtgcagacattgtt
tgtcttcaggaggtgcaaaatgaccattttgaggaattttttgcccctgagctggacaaa
catggatatcaagctttatacaagagaaagacaaatgaggtttacagtggaaatatccat
acaattgatggttgtgccacatttttccgtagagatagattttcccatgtcaaaaaatat
gaggttgaatttaataaggctgctcagtcgttgactgaggttgccgttcaaactacccag
aagaaagctgctttaaatcgtttggttaaggataatgttgcactaattgtggttttggaa
gcaaagttcagtaatcagggagctgacaatcctgggaagcggcagcttctttgtgtggca
aacacacatgtaaatgttccacaagagctaaaggatgtcaaaatctggcaggtgcatacg
ctcttaaagggattggagaaaatagctgcaagtgcagacattccaatgttggtgtgtggg
gattttaattctgttcctgggagtgcaccccattcacttcttgctatggggaaggtagat
ccaatgcatgcagatttgttggtagatcctcttgcaattttgcgacctcacagcaagttg
actcatcagttaccactggttagtgcttactcatcttttctaagaggtgttggtctgggt
ctggagcaacagaggagaagaatggaccccacaaccaatgaacctttattcacaaattgc
acgagagattttattggcactctagactacatactttacacagcggattcattgacagtt
gagtcattattggagctcttggatgaggatagcttgaggaaagacacagcacttccttct
ccagagtggtcctctgatcatatagctctgttagctgaatttcggtgtgtgcctaggcct
agacgctga
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