KEGG   Gossypium arboreum (tree cotton): 108454623
Entry
108454623         CDS       T05776                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
gab  Gossypium arboreum (tree cotton)
Pathway
gab03020  RNA polymerase
gab03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:gab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    108454623
  09124 Replication and repair
   03420 Nucleotide excision repair
    108454623
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gab03021]
    108454623
   03400 DNA repair and recombination proteins [BR:gab03400]
    108454623
Transcription machinery [BR:gab03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     108454623
DNA repair and recombination proteins [BR:gab03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      108454623
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 108454623
NCBI-ProteinID: XP_017608639
LinkDB
Position
9:86435494..86438403
AA seq 138 aa
MSGEEEENAAELKIGEEFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKSLQ
YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHD
DDAIERMLNDLSLIKKFE
NT seq 417 nt   +upstreamnt  +downstreamnt
atgtctggcgaagaggaagaaaacgcagctgagctcaaaattggagaagagtttttgaag
gcgaagtgtttgatgaattgtgaagtggctctaattcttgagcataagtatgagcagctt
cagcaaatgtctgacgatcccatgaatcaagtttcccaggtattcgagaagtcactgcag
tatgtaaaacgcttcagccgttataaaaatccagatgctgttagacaagttcgagaaatt
ttgagtagatatcagttagctgaattcgagctatgtgtccttggcaacctgtgtcctgaa
actgtggaggaagcaatcgctatggtgccttccatcaagactaaaggacgggctcacgac
gatgatgccattgagagaatgctaaatgacctgtctcttatcaagaaatttgaatag

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