KEGG   Gossypium arboreum (tree cotton): 108454940
Entry
108454940         CDS       T05776                                 
Name
(RefSeq) WD repeat-containing protein RUP2-like
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
gab  Gossypium arboreum (tree cotton)
Pathway
gab04120  Ubiquitin mediated proteolysis
gab04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:gab00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    108454940
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    108454940
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:gab04121]
    108454940
Enzymes [BR:gab01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     108454940
Ubiquitin system [BR:gab04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    108454940
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     108454940
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_TEP1_2nd Beta-prop_EML_2 WDR55 WD40_WDHD1_1st Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_DCAF12 Beta-prop_DCAF4 EIF3I Beta-prop_WDR75_1st WD40_RFWD3 WD40_like Beta-prop_TEP1_C Beta-prop_NUP159_NUP214 Beta-prop_SCAP NBCH_WD40 Beta-prop_SPT8 YNR034W-A-like Beta-prop_NWD2_C
Other DBs
NCBI-GeneID: 108454940
NCBI-ProteinID: XP_017609068
LinkDB
Position
9:complement(81888731..81890370)
AA seq 404 aa
MVQNPPIYASISISFEWAMNDFSSGFHPPAVPGHETKLSAEEKQPAARCEWDFSLATVVS
STANATVSDTLGVIEFDPSNTILATGGIARKIRIYTLNSLLRPQEETVHSQGKHQSIAFL
DHTNACDNCIFTPAKLSSLRWKPGTGGRILGSGDYDGVVMEYDIETKLPIFERDEHGGRR
VWSVDYSHSDPFLGASGSDDGTMQMWDPRCGEGGGSVAKVQPTKSRSSVCCVEFNPFGDA
LIATGCADKKAYVYDVRKMVEPVHIFDGHTKTITYVRFLNAQTLVSAGTDGCLKLWNIVD
SRLLRTYKGHVNSRSFVGLSVWRHGGLLGCGSENNQVFVYDTRWGEPIWVHGFEPVGRDS
SDHQHAFVSSVCWRQVNEDQCTLVAGGSNGVLHVFVGKRKSDSE
NT seq 1215 nt   +upstreamnt  +downstreamnt
atggtccaaaaccctcccatatatgcctccatctccatttcatttgaatgggcaatgaac
gatttctcctccggattccatccccccgccgtcccaggccatgaaaccaaactatccgca
gaagaaaaacaaccagccgctcgttgtgagtgggatttttcactcgccaccgttgtctcc
tccaccgccaacgccaccgtctctgacacccttggagtcatcgaattcgacccttctaat
accatcttagcaaccggagggattgcaaggaagattaggatttacactttgaattctttg
ttgcggcctcaagaagagactgtccattctcaaggtaagcaccaaagtattgcgtttcta
gaccatactaatgcgtgtgataattgcatctttaccccagctaagcttagtagccttagg
tggaaacccgggaccggaggccgcatcttgggttccggagactacgacggtgtggtcatg
gagtatgatatagagacgaagttgccaatcttcgaacgtgacgagcatggtgggaggcgg
gtttggagcgtcgactattctcattcggatccgttcctcggggcatctggctcggacgat
ggcaccatgcaaatgtgggacccacgctgcggcgaaggagggggaagtgtggctaaggtg
cagcccacgaagtcacgcagctcggtttgttgcgtggagttcaaccccttcggagatgca
ttgatagccaccggatgcgccgacaagaaggcctacgtctatgatgtacggaaaatggtg
gagcccgtacacattttcgatggacatacgaaaaccataacatacgttagatttctgaat
gcccaaacactggtttccgctggaaccgacgggtgtttaaaactatggaatatcgttgat
tctcgtttacttagaacatacaaagggcacgtaaacagtcggagctttgtggggttgtca
gtttggaggcatggagggttgcttggatgcggatcagaaaataaccaggtgttcgtttat
gataccaggtggggtgagcccatttgggtgcatggcttcgagcctgtgggtagagatagc
tccgaccatcagcatgctttcgtcagcagtgtgtgctggaggcaagtcaatgaagaccag
tgcacacttgttgcaggtggttccaatggggttttacacgttttcgtgggcaagaggaaa
tctgattcagagtag

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