Gossypium arboreum (tree cotton): 108455165
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Entry
108455165 CDS
T05776
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108455165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108455165
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108455165
mRNA degradation factors
5'-3' decay
Decapping complex
108455165
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Other DBs
NCBI-GeneID:
108455165
NCBI-ProteinID:
XP_017609258
UniProt:
A0A0B0PN38
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Position
7:complement(14492565..14498247)
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AA seq
795 aa
AA seq
DB search
MERSDGKLPINFFQTSSDNAHFDASQYEFFGQNAMEEVELGGLEDGEVEGPVFASIEDDE
YHLFDRGDVGSLGSLSDMDDLASTFAKLNRVVTGPRHPGVIGDRSCSFSRESSSATDWAV
DGEHLNWMDQHMFETEDSQESKRWSSQPQLTSARFSESKPLYRTSSYPQQLPEPHFSSEP
IVEPKPSIFTSFPPPGSRCQQSSPGNLKVPVLTSGSPSPFSAASLSSLSNSSLHLAGLSH
GLHFGGNLSQLTSPGPSFSSRSLNHWVNQSGLLLGERAGLLHLMLQQQIPHQNGLLFPQL
MSPQQQRMHHSVQPSLAHFAALQSQVYKSHPSHKMMLGLADLREHRTKSSQRNRQSMRLS
PQSSDAGSQKSESGLVQFRSKYMTGEEIESILKMQHAATHSNDPYVDDYYHQACVAKRSG
SRAKHQFYPSHPKESHSRTRNSGEQHLHHHVDALGKVPLSSIRRPRPLLEVDPPLGSGDG
SDQKTERPLEQEPMLAARITIEDGLYLLLEIDDIDRLIQFSQPQDGGAQLKRRRQILLEG
MAASLQLVDPLSKGGHAVSCAPKDDIVFLRLVSLAKGRKLITRLLQVLIPGSELMRIVCM
TIFRYLRFLFGGLSADLEAAETTNDLAKTVSVCVNGMDLRALSACLVAVVCSSEQPPLRP
LGSPAGDGASVIIKSVLERASQLLSHPSGNCSMPNYTLWRASFDEFFALLTKYCVSKYET
IIQSIHNQPQPTTEVIGSEAIRREMPCELLRASLPHTNESQRKLLMDFSQRSVPMNGSNS
PAGSTSRINSESVRV
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atggagagatcggatggcaaacttcctatcaacttctttcaaacttcctcagataatgcg
cattttgatgcttcccagtacgaattttttggtcaaaatgccatggaagaagtggagttg
ggaggtttggaagatggtgaagtggaaggtcctgtttttgcatccattgaagatgacgaa
taccatttgtttgatagaggagatgttgggagtttagggtcactatctgacatggatgat
ttggctagtacttttgcaaagttgaatagggttgtcacaggaccaagacatccaggagtt
attggtgatagatcctgttctttttcaagggaaagttcatctgctactgactgggctgta
gatggagagcatttaaactggatggatcagcatatgtttgaaacagaagattcccaagaa
agcaaaagatggtcctcacagccacaactgacttctgctcgtttttcagaatcaaagcct
ttgtatagaacttcgtcatatccccagcagctgccagagcctcacttctcaagtgaacca
attgttgagcccaaaccatcaatcttcacatctttccctcctcctggtagcagatgccaa
caatcttcacctggcaacctaaaagttccggttcttactagtggatctccgtcacccttt
tctgcagcaagcctctcttcattgtccaactccagtcttcatctggctggtctatctcat
ggattacattttggtggtaatttgtcccagttaacatctcctggcccatcttttagtagt
aggtcgctaaatcattgggttaaccagtctggtctactacttggagaacgtgctggtctt
ttgcatcttatgttgcaacagcaaatacctcatcaaaatggcctattgttcccacagtta
atgtcacctcaacagcagagaatgcaccattcagttcaaccatctttggcacattttgct
gcattgcaatctcaagtttataaatctcatccttcacataaaatgatgcttggactggct
gatcttagggaacatcgaactaaatcatcacaaagaaacaggcagagcatgcgtttgtct
ccgcaaagttctgatgctggtagccagaaaagtgagagtgggttggtacaattcagatcc
aagtatatgactggtgaagagatagagagtattctcaagatgcagcatgccgccacgcat
agtaacgatccttatgtagatgattattaccaccaagcttgtgttgccaaaagatctgga
tccagggctaaacatcaattttacccatctcacccgaaagaatcacattctcgaacccgt
aacagtggagagcagcatttgcatcaccatgttgatgcacttgggaaggtccccctctct
tccattcgtagaccccgtcctctacttgaagttgatcctcccttgggctcaggtgatggt
tctgatcagaaaactgagaggcctctggagcaggaacctatgcttgcagctagaatcacc
attgaagatggtctctaccttcttcttgaaatagatgatattgaccggctcatacaattc
agtcagccccaagatggtggggctcagctcaaaaggaggcggcagatcctgcttgaaggt
atggcagcatcacttcagcttgttgatccgcttagcaaaggtgggcatgcagttagctgt
gctcccaaagacgacatcgtgttcctaagattagtctcccttgcaaaaggccggaagctc
atcactaggctccttcaggttctcatccctggtagtgagcttatgcgaatagtgtgcatg
accattttccgttacttgagattcttgtttggtggtctttctgctgatctggaagcagct
gagacaactaatgaccttgcaaagacagtttccgtgtgtgttaatggcatggatcttcgt
gcacttagtgcgtgccttgttgcagttgtttgttcttcggagcaaccaccacttaggcct
cttggaagccctgctggggatggtgcttctgtgatcataaaatcagttcttgaaagggcc
agtcaacttctaagtcatccctctggaaattgcagcatgcctaattatactctctggagg
gcttcattcgatgaattttttgcccttcttaccaagtactgtgttagtaaatatgagaca
ataatccaatcaatacataaccagcctcagccaaccacagaagtcatcggttcagaggct
ataaggcgtgaaatgccttgtgaacttctacgagctagtcttcctcacactaatgaatcc
cagaggaagcttttgatggacttttctcagcgttcggtgcccatgaacggatccaattca
cctgctggaagtactagccgaatcaactctgaatcggtaagggtctaa
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