Gossypium arboreum (tree cotton): 108455564
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Entry
108455564 CDS
T05776
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108455564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108455564
03036 Chromosome and associated proteins [BR:
gab03036
]
108455564
Enzymes [BR:
gab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108455564
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
108455564
mRNA degradation factors
5'-3' decay
Decapping complex
108455564
Chromosome and associated proteins [BR:
gab03036
]
Eukaryotic type
Gene silencing
piRNA pathway
108455564
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
108455564
NCBI-ProteinID:
XP_017609604
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All DBs
Position
7:71371702..71377236
Genome browser
AA seq
493 aa
AA seq
DB search
MNSRGRYPPPGIGVGRGGGVNANPSFQSRPSQQHYVQRNLVHNQQHFQQHNQQHFQQQQQ
WLRRNQLPGGNDSSVIDEVEKTVQSEAVDSSSQDWKARLKIPPADTRYKTEDVTATKGNE
FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK
IDQDNNVIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVHL
LVGTPGRILDLAKKGVCILKDCSMLIMDEADKLLSPEFQPSVEQLIRFLPATRQILLFSA
TFPVTVKDFKDRYLQKPYIINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSI
IFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGI
DIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIK
QIPPHIDQAIYCR
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgaatagtagagggaggtatccaccaccggggatcggcgttggccgggggggcggagtg
aatgctaaccctagttttcagtccaggccgtcacaacaacactacgtgcagaggaatttg
gttcataatcagcagcactttcaacaacacaatcagcagcattttcaacaacaacagcag
tggctcaggcgtaaccagttacccggcggcaatgactccagtgtcatcgatgaggtcgaa
aagaccgtacaatcagaagccgttgactcgagttcacaagattggaaggccaggctaaag
ataccaccagcagatacccgctacaaaacagaggatgtgacagctactaaaggaaatgaa
tttgaggactattttctgaaacgtgaacttcttatgggaatatatgagaagggttttgaa
agaccatctcctattcaggaagagagtattcccattgctttgaccggaagtgatattctt
gccagggccaaaaatggaactggaaagacagcagcattttgcattcccgccttggaaaaa
attgaccaagataacaatgttattcaagttgttatacttgttccaactagagaactggct
ctgcagacatcacaagtgtgcaaggagcttgggaagcatttacaaattcaagtcatggtc
accacgggaggcaccagtctcaaggatgatattatgcgattgtatcaaccagtccatttg
ttggttggaacgcctggcagaattctagaccttgctaaaaagggtgtttgcattttgaaa
gattgttcaatgcttataatggatgaagcagataaacttttgtctccagagtttcaacct
tctgtagagcagctgatacgttttcttcctgcaactcgtcaaattttgttgttttctgcc
acattccctgttactgttaaggactttaaagacagatacctacagaagccttatattatt
aatctaatggatgagcttaccctgaagggtattacacaatattatgcttttgtggaagaa
agacagaaagtccactgtctaaatactcttttctctaagctgcaaataaaccaatcaatc
attttctgcaattcggtaaatcgggtggaactgttggccaagaaaattacagaacttggc
tactcttgcttttatatccatgcaaagatgcttcaggaccatcgtaacagagtatttcat
gatttccgtaacggcgcatgcagaaatcttgtttgtactgatctttttacaaggggtata
gatatccaagctgtgaatgttgttattaactttgacttccccaagaactctgaaacatac
ctccatagggttggtcgatcaggaaggtttggtcatcttggattagctgtgaatttgatc
acttatgaagaccgctttaacttgtataggattgagcaagaacttgggactgaaattaag
caaattcctccacatattgatcaggctatttactgccggtga
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