Gossypium arboreum (tree cotton): 108456704
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Entry
108456704 CDS
T05776
Name
(RefSeq) rRNA biogenesis protein RRP5
KO
K14792
rRNA biogenesis protein RRP5
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gab03009
]
108456704
Ribosome biogenesis [BR:
gab03009
]
Eukaryotic type
90S particles
Other 90S particles
108456704
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
OB_RRP5_4th
OB_RRP5
Spt6_S1
Suf
HAT_PRP39_C
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
NRDE-2
Motif
Other DBs
NCBI-GeneID:
108456704
NCBI-ProteinID:
XP_017610800
LinkDB
All DBs
Position
9:76304377..76323652
Genome browser
AA seq
1928 aa
AA seq
DB search
MAASSKKFQKKKSNEGKRKFNKASKKQFKTKKDGAVKSEAVALQLEDDVPDFPRGGGSSL
SKHERDEIRAEVDAEFEAEELASKKNKRKKSQKKIQAMPDDLGSLFGDGITGKLPRYANK
ITLKNISPGMKLWGVVAEVNEKDLVISLPGGLRGLVRAGDALDPVVSNKVENNEGDFLKN
IFYPGQLVSCIVLQLDDDKKETGKRKIWLSLRLSFLHKGFTLDAVQEGMVLTGYVISIED
HGYMLHFGLSSFTGFLRKDGHAESKDVEVRTGQFLQGVIKSIDKTRKVVNLSSDPDTVSK
CVTKDLKGISIDLLIPGMLINASVRSTLENGIMLSFLTYFTGTVDTCHLQNKFPNKNWKD
DYNQNKKVNARILFIDPSTRAVGLTLNPHLVHNKAPPLHVNIGDIFDQSKVVRVDRGFGL
LLEIPSKPVSTPAYVNVSDVAEEEVRKLEKKFKEGTQVRVRILGFRHLEGLATGILKASA
FEGPVFTHSDVKPGMVVKAKVTSLDSFGAIVQFPGGVKALCPTRHLSEFEIAKPGKKFKV
GAELVFRVLGCKSKRITVTYKKTLVKSKLGIISSYAEATEGLVTHGWITKIEKHGFFVRF
YNGVQGFAPRSELGLGPGDDPNSMYHVGQVVKCRVTGSSPASRHINLSLQMRPVRISEDD
MVKLGSIVSGVVEGLTPSAVVINVNSKAHLKGMISNEHLADHHERAALLKSILKPGYKFD
QLLVLDIEGNNIVLSAKFSLISSAEQLPSDNSQIRPNTVVHGYVCNLIETGCFVRFLGRL
TGFSPRSKAMDDHKADLSGAFYIGQSVRCNIVDVNSETARITLSLKQSCCSSTDATFIQE
YFILEEKIARLQSLGSDGSELKWIEGFNIGSVIEAKIGEAKDIGVVVSFDKYNDVLGFIT
HSQLGGLSLETGSVVQAAVLDVDKAERLVDLSLKPEFVEKSQEGSSKSQPHKKKRKREAS
KALELHQTVNAVVEIVKEHYLVIAIPEYNHAIGYASIADYNTQKLPQKQFLNGQRVIATV
MALPSPETSGRLLLLLNSIGEVTETSCSKRAKKKSSYNVGSLVPAEVTEIMPLELRLKFG
IGFCGRVHITEVNDNNVLEKPFGNFKVGQTITARIVGKPNQKGHLWDLSIKPAMLADAGE
IGVKTALEEFDFSTGQLVTGYVYKVDSEWAWLTISRHVKARLFILDTGCEPNELQQFQER
FKVGKPVSGHILNVNKDKKLLQIVRHPLGALSTRNVGDEDKRKGESGNNISDESVTAHIH
EGDILGGRISKILPGIGGLVVQIGPNNYGRVHFTELKDAWESDPLSGYHEGQFVKCKVLE
VSHSTKGTIHIDLSLRLSLDGLIPKNPLELASDVDSTSKRAEKVEDLYPNMAVQGYVKNV
IPKGCFIMLSRKVDAKILMSNLSNGYVNDPKKEFPIGKLVSGRVLAVEPLSKRVEVTLKN
SDTKGTSKSEINDFSRLHVGDIVSGRIRRVESYGLFITLDHTNMVGLCHFSELSDDHIEN
IQTNYAAGEKVKAKILKLDEERHRISLGMKNSYFTDDIDFQITEQEESDEDIEETGVADD
DADDEARSILLTDSTGMDIEYGSGVSDVLAQAESRASIPPLDVTLDDIEHSDMENFISQN
QENNEVTAVDEKSKRRAKKKAKEEREREIRAAEERQLEKDIPRTTDEFEKLVRSSPNSSF
VWIKYMAFMLNSADIEKARAIAERALRTINIREETEKLNIWVAYFNLENQYGNPPEEAVQ
KVFQRALQYCDPKKVHFALLGMYERTEQHKLAEELLDKMSKKFKHSCKLWLRRVQMLLMQ
QQDRVQPVVNRALLCLPHHKHVKFISQAAILEFKSGVPDRGRSMFEGVLREYPKRTDLWS
IYLDQEIRLGDEDVIRALFERAISLSLPPKKMKFLFKKYLNYEKSCGDEARIESVKRKAM
DYVESTLT
NT seq
5787 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgtcttcaaagaaatttcagaagaaaaaatccaatgaagggaaacggaagttc
aataaagcgtccaagaaacagttcaaaacgaagaaggacggtgccgttaagtctgaggct
gtagctttgcaacttgaagacgatgtccccgacttccccagaggcggggggagttccttg
agcaaacacgaacgtgatgaaattcgagcagaagtggatgcggagtttgaggcagaggag
ctggcatcaaagaagaataagaggaagaaatcgcagaagaaaatccaggctatgccggat
gacttgggttccttgtttggtgatggcattactggcaaactacctagatacgcaaataaa
ataactttaaagaatatttctcctggaatgaagctctggggagttgttgctgaagtaaat
gagaaggatcttgtaattagtcttccaggcggcttacgtggtttagttcgtgctggtgat
gctcttgatcctgttgtcagtaataaagttgagaacaatgaaggggatttcctcaaaaat
atattctaccctgggcagctggtttcttgcattgtgctgcagttggatgatgataagaag
gagactggcaaaagaaaaatatggctttccttgcgtctctcttttttgcacaaaggcttc
accttggatgctgttcaagaggggatggttctcactggatacgttataagcattgaagat
catggttacatgcttcactttggactatcgtcattcacggggtttttacgaaaagatggc
catgctgaaagcaaggacgttgaagtgaggactggacagtttttacaaggggttattaag
agcattgataaaactcgcaaagttgttaatttgagttctgacccagataccgtgtctaaa
tgtgtaaccaaggatcttaagggcatctcaattgatcttcttatccctggcatgttgatt
aatgcttcggtgcggtcaacccttgagaatggtatcatgttatcatttctgacatacttt
actggaacagttgatacgtgtcatttacaaaataaattccctaataagaactggaaggat
gactacaaccaaaataagaaggttaatgctcggatattgtttattgatccctcaactaga
gcagttggcttgaccctgaatcctcatcttgttcataacaaagctcctccattgcatgtt
aacattggagatatttttgatcagtcaaaagtggtcagggtcgatagagggttcggtctt
ctgctcgaaatcccttctaaaccagtgtcaactccagcctatgtgaatgtatctgatgtg
gctgaagaggaagtccgcaagctagaaaaaaagtttaaggaaggcactcaagttcgtgtt
cgaattcttgggttccgacacttggaagggcttgccactggtattttaaaggccagtgca
tttgaaggaccagttttcactcactcagatgtgaaacctgggatggtggtaaaagctaaa
gtcacttcacttgacagctttggtgccattgtgcaatttcctggtggtgtgaaggcacta
tgtcccacacggcacttgtctgaatttgaaattgcaaaacctggaaagaagtttaaggtt
ggagctgaattagtcttccgggtgctcggttgcaagtctaagagaataactgtcacttac
aagaaaactctcgtgaaatcgaaacttggtattattagttcttatgctgaagcaactgag
ggactagtaactcatggatggataactaaaattgaaaagcatggattctttgtccggttt
tacaatggagtccaaggatttgcacctagatccgaacttggcttaggaccaggagatgat
ccaaattcaatgtatcatgtgggacaagttgttaaatgcagagtaaccggttcttcacct
gcttcaaggcatatcaatcttagtttgcagatgaggcccgtgaggatttctgaagacgat
atggtcaagttgggtagcatagtttctggggttgttgagggtttaactccctctgcagta
gttataaatgttaactcgaaagctcacttgaagggtatgatatctaatgaacatttggca
gatcatcatgaacgtgctgccttgttgaaatcaatcctgaagcctggatataagtttgat
caactgctggttctagatattgagggcaataatattgtactctctgcaaaattctctctc
ataagttcggctgaacaactgccttctgataacagtcagatccgacctaacacagtggtt
catggctatgtttgtaatttaattgaaactggctgctttgtccgctttcttgggcgtttg
actggtttctcacctcgaagcaaggcaatggatgaccataaggctgatctctctggagcc
ttttacattggccaatctgttcgctgtaatatagtcgatgtaaatagtgaaacagcaaga
ataacactttctttgaagcaatcatgttgttcttcaacagatgcaacgtttattcaagaa
tactttattttagaggagaagattgctaggctgcaatcactgggctctgatggatctgag
ttgaagtggattgaaggatttaatattggcagtgtcattgaggcaaaaattggagaggca
aaggatattggagtagttgtcagctttgacaaatataacgatgttttaggctttatcaca
cattctcaattaggtggactttctttagaaactggatctgttgtacaagctgcagttctt
gatgttgacaaggcagaacgccttgttgatttatccttgaaacctgaatttgttgagaaa
tcacaagagggaagctctaaaagccaaccacacaaaaagaaacgcaaaagagaagcttcc
aaggccttggagctgcaccaaacagtaaatgctgttgtggagattgtgaaagaacattac
ttggttattgcaattcctgagtataaccatgccatagggtatgcatcaatagcagattac
aatacacagaagcttccgcagaaacaatttttgaatgggcagagggttattgcaactgtt
atggctcttccgagtcctgaaacgtcaggaaggttgcttttactccttaattcaattggt
gaggtcactgagacatcctgttcaaaacgggccaaaaagaagtctagttataatgtggga
tcattggttccagcagaggttactgaaataatgccccttgagttgagattgaaatttgga
attggtttctgtggacgggttcatataacagaggtaaatgataataatgttcttgaaaag
ccatttgggaacttcaaagttgggcagacaatcactgcaaggattgtcggaaagcctaat
cagaagggacacctatgggatttgtctattaaacccgccatgcttgctgatgctggtgaa
ataggtgttaagactgcactggaagagtttgatttttcaactggacaacttgtcactggt
tatgtctacaaagtggacagtgaatgggcgtggttaaccatttctcgtcatgtgaaagct
cgactatttattcttgataccggatgtgaacctaatgaacttcagcaattccaggagcgc
tttaaagttggaaagcctgtttctggtcacattttaaatgttaacaaggacaaaaagctg
ttacaaatagtgcgacatcctctaggtgccctttctactaggaatgttggtgatgaagat
aaaagaaaaggtgaatcaggtaataacatttcagatgagagtgtgacagctcatatacat
gaaggagacattctaggtggtagaatttccaaaatacttccaggtataggaggactggtt
gtgcaaattggtcctaataattatggtagggttcactttactgaactgaaggatgcatgg
gaatcagacccactatctggatatcatgaggggcaattcgttaagtgcaaagtcctagaa
gtgagccactcaaccaagggaactattcacattgatttatccttacggctatctttggat
ggcctgattcccaagaatcctttggaacttgcgagtgatgtggattctacaagcaagcgt
gcagaaaaagttgaggatctttatcccaatatggctgtacagggttatgttaaaaatgtt
attccaaaaggatgcttcattatgctttcaaggaaggtagatgcaaaaatcctcatgtca
aatttatctaatggctatgttaatgacccgaaaaaggaatttcccataggaaagcttgta
tctggaagggtattagcagttgagcctttgtcaaagcgagtagaagttaccttgaaaaat
tcagatactaagggcacttcaaaatctgaaattaatgattttagtagactgcacgttgga
gatatagtttcaggcaggatcaggcgtgtggagtcatatggtttgtttatcacacttgac
cacacaaacatggttggactttgccatttctctgagctttcagatgatcacattgagaac
atccaaactaactatgctgcaggggagaaggttaaagcgaagatattaaagttggatgag
gaaagacaccggatttcccttggcatgaaaaattcatattttaccgatgatattgacttc
caaataactgaacaagaagagtctgatgaagacattgaagagactggtgtagcagatgat
gatgcggatgatgaggcacggtcaatactgttgacagacagcactgggatggatatcgag
tacggaagtggagtgagtgatgttcttgctcaagcagaatctagagcttcaattcctcca
cttgatgtcactcttgatgacattgaacactctgacatggaaaattttattagtcaaaat
caagaaaataatgaggttaccgccgttgatgagaagagcaagagacgggcaaaaaaaaaa
gcaaaggaagagagggagagagaaattagagctgctgaggaaagacaattggagaaggat
ataccaagaactactgatgaattcgagaaacttgttaggagctctcctaatagtagtttt
gtgtggattaaatacatggctttcatgcttaattcagctgatatcgagaaagctcgtgct
attgctgaaagggctttgagaaccattaacattcgagaagaaacagagaagctaaatatc
tgggtggcttactttaatttggagaatcagtatgggaatcctccagaggaagctgtgcaa
aaagtatttcaaagggcattgcagtattgtgatcccaaaaaggtacattttgcacttttg
ggcatgtatgagaggacagagcaacataaattggccgaagagctacttgacaaaatgagc
aagaagtttaagcactcgtgcaagctttggttgagacgggtgcagatgctgttgatgcaa
cagcaggatcgggttcaacctgttgttaaccgtgctttactctgccttccacaccataag
cacgttaagtttatttcacaggcagctatacttgagttcaaatctggggttcctgataga
gggagatctatgtttgagggagttttacgagagtacccaaagagaacggatttgtggagc
atttatcttgatcaagaaattcgacttggagatgaagatgtgattcgtgctctgtttgag
agggcaattagtttgagcttaccacccaaaaagatgaagtttttattcaaaaagtatctc
aattacgaaaagtcctgtggtgatgaggcaagaattgaatctgtcaaacggaaggcaatg
gattacgtagaaagtactctaacttga
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integrated database retrieval system