Gossypium arboreum (tree cotton): 108456824
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Entry
108456824 CDS
T05776
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108456824
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108456824
03012 Translation factors [BR:
gab03012
]
108456824
Enzymes [BR:
gab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108456824
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108456824
Translation factors [BR:
gab03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
108456824
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
TFIIA
nSTAND3
ATPase
AAA_19
NACHT
Dicer_dimer
RsgA_GTPase
AAA_23
Motif
Other DBs
NCBI-GeneID:
108456824
NCBI-ProteinID:
XP_017611004
LinkDB
All DBs
Position
3:9957320..9975616
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AA seq
1215 aa
AA seq
DB search
MPPSYSPHFLPFSSQFLTHTIKPSLFSPTMKDRPPSLYGAVYVPPHHRLISSPNNQNATK
NSSAPAILSKLRDHQNTPILNAKGTASPPSLPHLQQQQQQQQQGTYNNNNGSKSSNNQNA
QYNSAYCLGISENVSDRQLDLSLQSGTFDEANIEEWKQKLAMLLHDDGKQELVSREKKDR
RDFEQIAALASRMGLYSHLYSKVAVFSKVPLPNYRFDLDDKRPQREMSLNFGLLKRVNAY
LGEYLSKKSRNKESFSDNCFSRSSSNSSIVTEEGLFEQPEPLASGTAVMEKILLRRSSLL
RDQQQAWQESLEGREMLEFRQNLPAYKEKDTILIAILQNQVVIISGETGCGKTTQIPQFI
LESEIDSARGAFCSIICTQPRRISAISVSERVASERGEKLGESVGYKVRLEGIKGRDTRL
LFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELKLILMSA
TLDAELFSSYFDGAPLIHIPGFTYPVRTHFLENILEMTGYRLTPSNQIDDYGQERMWKMS
KQAPRKRKSQIVSSVEDALRAADFKDFSRQTQESLSCWNPDCIGFNLIEYLLSYICENER
PGAVLVFMTGWDDISSLKDKLQAHPILGDPSRVLLLTCHGSMASSEQKLIFEEPEDGVRK
IVLTTNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPSWVSKVSTQQRRGRAGRV
QPGECHHLYPRCVYDAFTEYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPKLLA
VQNAIEYLKVIGALDENENLTVLGRYLTMLPMEPKLGKMLILGAILNCLDPVLTIVAGLS
VRDPFLTPLDKKDLAEAAKLQFSHDHSDHLALVRAYEGWKEAEKDLAGYDYCWKNFLSAQ
SMKAIDSLREEFLSLLKDTGLIDSYATSCNGWSYDQHLSRAVICYGLYPGICSVVHNEKS
FSLKTMEDGPVLLYSNSVNARESRIPYPWLVFNEKIKVNSVFLRDSTAVSDSVLLLFGGS
ISRGDVDGHLKMLGGYLEFFMQPAIAEKYLSLRREFDELIQNKLLNPQMVLHLHHELISA
IRLLVSEDQCDGRFVFGRPDLKPSNMPVAPPQRSLISRTESGPGGDNSKSRLQTLVTRAG
YAAPTYKTSQLENNQFQATVEFNGMQIIGQPCNNKKSAEKDAAAEALQWLMSGTWTGHEY
INYTSMFLKKSKRDN
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgcccccctcttactctccgcatttccttcctttctcttcacaatttctcacccacacc
ataaaaccctcactcttttctccgacgatgaaggatcggcctccgtccttgtacggcgcc
gtctacgtccctccccaccaccgtctcatctcatctcctaacaaccaaaatgctaccaag
aactcctccgcccccgcgattctctccaagcttcgcgaccaccaaaacacacccattttg
aacgctaagggcactgcttctcctccttctttgccacacttacaacagcaacagcaacag
caacagcaagggacttataataacaataatggtagtaaaagcagtaataatcaaaatgca
cagtataattcggcttactgtctggggatttccgagaatgtctctgatcgccagctggat
ttgtctttgcaatcgggtaccttcgatgaagctaacattgaagagtggaagcaaaagcta
gccatgctactacatgatgatgggaaacaggagttagtatcaagggagaagaaggacagg
cgagactttgagcaaatagcagctttggcaagcagaatgggtttgtatagccatctttat
tccaaagttgctgtcttcagtaaggttcccctgcctaactacagatttgacctggatgat
aagcgtccacagagggagatgagcttaaattttggtttgttgaagagagtcaatgcctat
cttggagagtacctttctaaaaagtctaggaataaggaaagcttttcggataattgtttt
tcaagatcaagcagtaatagcagtatagttactgaagaaggactttttgagcagccagag
cctttagcatctggcacagctgttatggagaaaattcttttgcggagaagttcactgctg
cgtgatcagcaacaagcgtggcaggagtctcttgaaggaagagaaatgctagaattccgt
caaaatcttcctgcttataaagagaaagataccatattgattgccattttacagaatcag
gttgttattatctcaggtgaaacaggatgtggcaagaccacacaaattccccaatttatt
ttagaatctgagatagattctgcgcgcggagctttttgtagcattatatgtacgcaacct
aggcgaatatctgctatatctgtttcagaaagagttgcttcagaaagaggagagaaattg
ggtgaatctgttggatataaagtacggcttgagggtattaaagggagggatacccgtctt
ctcttttgcacaacaggcattttgttgagaaggctactagttgatagaaatttaaaaggt
gtaactcatgtcattgtggatgagattcatgaacgagggatgaacgaagatttcctactc
attgtccttaaagatctccttcctcgccgcccagaattaaagctgattttgatgagtgca
actttggatgctgagcttttctcctcgtattttgatggggcacctttaatccacattcca
ggttttacgtacccagttcgaacacattttttggagaatattttggaaatgacaggttat
aggttgactccatctaatcaaattgatgattatggacaagaaagaatgtggaaaatgagt
aagcaagccccgagaaagaggaagagccaaattgtctcttctgttgaggatgcgctccgg
gcagctgattttaaggatttcagccgtcagactcaggagtctttgtcatgttggaatcct
gattgtattggttttaatctcatagaatatcttttatcctatatctgtgagaatgagagg
cccggtgcagttctagtctttatgactgggtgggatgacataagttctctgaaggataag
ctgcaagctcatccaatccttggagatcctagtcgagttttgctacttacttgccatggt
tctatggcgagttctgagcagaagttaattttcgaagagcctgaagatggagtgaggaaa
atagtattaactactaatattgctgagacaagcataacaattaatgatgttgtttttgtt
cttgattgtggaaaggccaaggagacatcgtacgacgcattgaataacactccttgtttg
ctaccatcatgggtttccaaggtttctactcaacaaagaagaggaagagctggccgagtg
cagcctggagagtgtcaccatctctatcctcgatgtgtatatgatgccttcactgaatat
caattacctgaaattttgagaacacctttgcagtctctttgtctgcaaatcaaaagtttg
aaactcggaagtatatctgaattcctatcaagggcattgcagtcaccaaagttactggcg
gttcaaaatgccattgaatatttaaaagtcatcggggccttggatgagaatgaaaatctg
actgtgctggggcgttatttgactatgcttccaatggagccaaaacttgggaagatgctc
atccttggtgctattcttaattgcctggatcctgtgttgactattgttgctggtcttagt
gttagagatccttttttgacaccattagacaagaaagatcttgcagaggctgcaaagttg
caattttcccatgatcatagtgaccaccttgcacttgtccgggcttacgagggctggaaa
gaagccgagaaagaccttgctggatatgattattgctggaaaaattttctttctgcacaa
tcaatgaaggcaattgattctcttagggaggagtttctttcattgctcaaggataccggt
cttattgacagctatgcaactagctgtaatggctggagctatgatcagcatctcagccga
gcagttatttgttatgggctttatcctggaatttgctctgtcgtgcataatgagaaatca
ttttcactgaaaactatggaggatggacctgtacttctttactcgaactctgttaatgct
cgggaatctagaattccgtatccttggctggttttcaatgagaagataaaagtgaactct
gttttcctgcgggattcaacagctgtctctgattcagtgcttctcctgtttggtggtagc
atctcaagaggagatgttgatggacacttgaagatgttgggagggtatttagaatttttc
atgcaacctgctatagctgaaaaatatctaagtttaaggagagaatttgatgagctgatt
caaaataaattactgaatccccaaatggtcctacatcttcatcatgagctcatttctgca
atacggttgctggtttctgaggatcagtgtgatggaagatttgtatttggccgtccagac
cttaaaccatcaaatatgcctgttgctccaccacaacgttctttgatttcaaggacagag
agtggtcccgggggtgataattctaaaagtcggctccaaacactggtcactagggcagga
tatgctgcgccaacctacaagacaagtcaattggaaaacaatcagttccaagctacggtt
gagttcaatggtatgcaaatcatagggcagccttgcaacaacaagaagagtgcggaaaag
gatgctgcagctgaggctttgcagtggctgatgagtggtacctggacaggccatgagtat
atcaattatacgtcgatgtttctgaagaaaagcaagagggataactga
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integrated database retrieval system
